3l7v: Difference between revisions

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{{Seed}}
[[Image:3l7v.jpg|left|200px]]


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==Crystal structure of a hypothetical protein smu.1377c from Streptococcus mutans UA159==
The line below this paragraph, containing "STRUCTURE_3l7v", creates the "Structure Box" on the page.
<StructureSection load='3l7v' size='340' side='right'caption='[[3l7v]], [[Resolution|resolution]] 2.26&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3l7v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans_UA159 Streptococcus mutans UA159]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L7V FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.256&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3l7v|  PDB=3l7v  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l7v OCA], [https://pdbe.org/3l7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l7v RCSB], [https://www.ebi.ac.uk/pdbsum/3l7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l7v ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q8DTG7_STRMU Q8DTG7_STRMU]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l7/3l7v_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l7v ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Members of the Sua5_YciO_YrdC protein family are found in both eukaryotes and prokaryotes and possess a conserved alpha/beta twisted open-sheet fold. The Escherichia coli protein YrdC has been shown to be involved in modification of tRNA. The crystal structure of smu.1377c, a hypothetical protein from Streptococcus mutans, has been determined to 2.25 A resolution. From structure analysis and comparison, it is shown that smu.1377c is a member of the Sua5_YciO_YrdC family and that it may play the same role as E. coli YrdC.


===Crystal structure of a hypothetical protein smu.1377c from Streptococcus mutans UA159===
The structure of the hypothetical protein smu.1377c from Streptococcus mutans suggests a role in tRNA modification.,Fu TM, Liu X, Li L, Su XD Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jul 1;66(Pt, 7):771-5. Epub 2010 Jun 23. PMID:20606270<ref>PMID:20606270</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
The line below this paragraph, {{ABSTRACT_PUBMED_20606270}}, adds the Publication Abstract to the page
<div class="pdbe-citations 3l7v" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 20606270 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_20606270}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
3L7V is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L7V OCA].
[[Category: Streptococcus mutans UA159]]
 
[[Category: Fu T-M]]
==Reference==
[[Category: Liu X]]
<ref group="xtra">PMID:20606270</ref><references group="xtra"/>
[[Category: Su X-D]]
[[Category: Streptococcus mutans]]
[[Category: Fu, T M.]]
[[Category: Liu, X.]]
[[Category: Su, X D.]]
[[Category: Smu 1377c]]
[[Category: Transcription]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 21 10:17:23 2010''
Retrieved from "https://proteopedia.org/3l7v"