DRuMS: Difference between revisions
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==What is DRuMS?== | ==What is DRuMS?== | ||
DRuMS refers to a set of standard color schemes for macromolecular visualization, released in 2000. The official DRuMS website is [http://www.umass.edu/molvis/drums/ www.umass.edu/molvis/drums]. DRuMS color schemes are derived in part from those used in the popular molecular visualization programs RasMol, and are used in Chime, [http://proteinexplorer.org Protein Explorer], the [http://bioinformatics.org/jmol-tutorials Jmol Tutorial-Authoring Template], and [http://www.worthpublishers.com/lehninger3d Biochemistry in 3D], the latter being a set of online 3D structure tutorials that accompanied ''Lehninger Principles of Biochemistry, 3rd Ed.''. The name ''DRuMS'' represents the names of its authors: [http://www.molvisions.com Timothy '''D'''riscoll], [http://moleculesinmotion.com Frieda '''R'''eichsman], [http://martz.molviz.org Eric '''M'''artz], and Roger A. '''S'''ayle (author of RasMol). | DRuMS refers to a set of standard color schemes for macromolecular visualization, released in 2000. The official DRuMS website is [http://www.umass.edu/molvis/drums/ www.umass.edu/molvis/drums]. DRuMS color schemes are derived in part from those used in the popular molecular visualization programs [[RasMol]], and are used in [[Proteopedia]], [[Jmol]] (see [http://jmol.sourceforge.net/jscolors/ Jmol Colors]), [[Chime]], [http://proteinexplorer.org Protein Explorer], the [http://bioinformatics.org/jmol-tutorials Jmol Tutorial-Authoring Template], and [http://www.worthpublishers.com/lehninger3d Biochemistry in 3D], the latter being a set of online 3D structure tutorials that accompanied ''Lehninger Principles of Biochemistry, 3rd Ed.''. The name ''DRuMS'' represents the names of its authors: [http://www.molvisions.com Timothy '''D'''riscoll], [http://moleculesinmotion.com Frieda '''R'''eichsman], [http://martz.molviz.org Eric '''M'''artz], and Roger A. '''S'''ayle (author of RasMol). | ||
==The DRuMS Color Schemes== | ==The DRuMS Color Schemes== | ||
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{{Template:ColorKey Composition Protein}}, {{Template:ColorKey Composition DNA}}, {{Template:ColorKey Composition Ligand}}. | {{Template:ColorKey Composition Protein}}, {{Template:ColorKey Composition DNA}}, {{Template:ColorKey Composition Ligand}}. | ||
If you enclose the wiki text in <nowiki>< | If you enclose the wiki text in <nowiki><span style="font-size:150%">...</span></nowiki> tags, it will look like this: | ||
< | <span style="font-size:150%">{{Template:ColorKey Composition Protein}}, {{Template:ColorKey Composition DNA}}, {{Template:ColorKey Composition Ligand}}.</span> | ||
===Composition=== | ===Composition=== | ||
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<blockquote><big> | <blockquote><big> | ||
{{Template:ColorKey_Helix}}, | {{Template:ColorKey_Helix}}, | ||
{{Template:ColorKey_310Helix}}, | |||
{{Template:ColorKey_PiHelix}}, | |||
{{Template:ColorKey_Strand}}, | {{Template:ColorKey_Strand}}, | ||
{{Template:ColorKey_Loop}}, | |||
{{Template:ColorKey_Turn}}. | {{Template:ColorKey_Turn}}. | ||
</big></blockquote> | </big></blockquote> | ||
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<pre> | <pre> | ||
{{Template:ColorKey_Helix}}, | {{Template:ColorKey_Helix}}, | ||
{{Template:ColorKey_310Helix}}, | |||
{{Template:ColorKey_PiHelix}}, | |||
{{Template:ColorKey_Strand}}, | {{Template:ColorKey_Strand}}, | ||
{{Template:ColorKey_Loop}}, | |||
{{Template:ColorKey_Turn}}. | {{Template:ColorKey_Turn}}. | ||
</pre> | </pre> | ||
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===Additional DRuMS ColorKey Templates=== | ===Additional DRuMS ColorKey Templates=== | ||
Proteopedia's ''Scene Authoring Tool'' implement much of the DRuMS color schemes, but not all. | Proteopedia's ''Scene Authoring Tool'' implement much of the DRuMS color schemes, but not all. | ||
Several portions not implemented concern nucleotides: | Several portions not implemented concern nucleotides. These are based on the following mnemonics for A, C, G, T, & U: | ||
<br><b><big> | |||
<font color="#5050ff">Azure</font>, | |||
<font color="#e00000">Crimson</font>, | |||
<font color="#00c000">Green</font>, | |||
<font color="#d0d000">Tweety Bird</font>, | |||
<font color="#cc9900">Umber</font>.</big></b> | |||
<blockquote><big> | <blockquote><big> | ||
{{Template:ColorKey Purines}}, {{Template:ColorKey Pyrimidines}}, | {{Template:ColorKey Purines}}, {{Template:ColorKey Pyrimidines}}, | ||
