3ndj: Difference between revisions

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{{Seed}}
[[Image:3ndj.png|left|200px]]


<!--
==X-ray Structure of a C-3'-Methyltransferase in Complex with S-Adenosyl-L-Homocysteine and Sugar Product==
The line below this paragraph, containing "STRUCTURE_3ndj", creates the "Structure Box" on the page.
<StructureSection load='3ndj' size='340' side='right'caption='[[3ndj]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ndj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Micromonospora_chalcea Micromonospora chalcea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NDJ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JHZ:(2R,4S,6R)-4-amino-4,6-dimethyl-5-oxotetrahydro-2H-pyran-2-yl+[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl+dihydrogen+diphosphate+(non-preferred+name)'>JHZ</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3ndj|  PDB=3ndj  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ndj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ndj OCA], [https://pdbe.org/3ndj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ndj RCSB], [https://www.ebi.ac.uk/pdbsum/3ndj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ndj ProSAT]</span></td></tr>
 
</table>
===X-ray Structure of a C-3'-Methyltransferase in Complex with S-Adenosyl-L-Homocysteine and Sugar Product===
== Function ==
 
[https://www.uniprot.org/uniprot/B5L6K6_MICCH B5L6K6_MICCH]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_20527922}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 20527922 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nd/3ndj_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_20527922}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3NDJ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Micromonospora_chalcea Micromonospora chalcea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDJ OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ndj ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:20527922</ref><references group="xtra"/>
</StructureSection>
[[Category: Large Structures]]
[[Category: Micromonospora chalcea]]
[[Category: Micromonospora chalcea]]
[[Category: Avey, M K.]]
[[Category: Avey MK]]
[[Category: Bruender, N A.]]
[[Category: Bruender NA]]
[[Category: Holden, H M.]]
[[Category: Holden HM]]
[[Category: Kaur, M.]]
[[Category: Kaur M]]
[[Category: Thoden, J B.]]
[[Category: Thoden JB]]
[[Category: C-3'-methyltransferase]]
[[Category: Keto sugar]]
[[Category: Kijanose]]
[[Category: Micromonospora chalcea]]
[[Category: S-adenosyl-l-homocysteine]]
[[Category: Sugar methylation]]
[[Category: Tcab9]]
[[Category: Tetradeoxy sugar]]
[[Category: Tetronitrose]]
[[Category: Transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Aug 12 00:13:41 2010''

Latest revision as of 10:29, 21 February 2024

X-ray Structure of a C-3'-Methyltransferase in Complex with S-Adenosyl-L-Homocysteine and Sugar Product

3ndj, resolution 1.50Å

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