2vyx: Difference between revisions

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{{Seed}}
[[Image:2vyx.png|left|200px]]


<!--
==Crystal structure of the T. thermophilus dodecin W38F mutant==
The line below this paragraph, containing "STRUCTURE_2vyx", creates the "Structure Box" on the page.
<StructureSection load='2vyx' size='340' side='right'caption='[[2vyx]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2vyx]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VYX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VYX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_2vyx|  PDB=2vyx |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vyx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vyx OCA], [https://pdbe.org/2vyx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vyx RCSB], [https://www.ebi.ac.uk/pdbsum/2vyx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vyx ProSAT]</span></td></tr>
 
</table>
===CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN W38F MUTANT===
== Function ==
 
[https://www.uniprot.org/uniprot/DODEC_THET8 DODEC_THET8] May function as storage protein that sequesters various flavins and other cofactors, thereby protecting the cell against undesirable reactions mediated by the free cofactors. Binds and sequesters FMN, FAD, lumiflavin and lumichrome, and can also bind coenzyme A.<ref>PMID:17855371</ref>
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2VYX is a 12 chains structure with sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VYX OCA].  
Check<jmol>
[[Category: Thermus thermophilus]]
  <jmolCheckbox>
[[Category: Essen, L O.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/2vyx_consurf.spt"</scriptWhenChecked>
[[Category: Meissner, B.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Coenzyme some]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Dodecin]]
  </jmolCheckbox>
[[Category: Flavin binding protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vyx ConSurf].
[[Category: Flavin dimer]]
<div style="clear:both"></div>
[[Category: Flavoprotein]]
== References ==
[[Category: Hypothetical protein]]
<references/>
[[Category: Protein binding putative storage protein]]
__TOC__
 
</StructureSection>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 25 08:21:40 2010''
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Essen L-O]]
[[Category: Meissner B]]

Latest revision as of 15:38, 13 December 2023

Crystal structure of the T. thermophilus dodecin W38F mutant

2vyx, resolution 1.50Å

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