2zoo: Difference between revisions

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{{Seed}}
[[Image:2zoo.png|left|200px]]


<!--
==Crystal structure of nitrite reductase from Pseudoalteromonas haloplanktis TAC125==
The line below this paragraph, containing "STRUCTURE_2zoo", creates the "Structure Box" on the page.
<StructureSection load='2zoo' size='340' side='right'caption='[[2zoo]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2zoo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_translucida_TAC125 Pseudoalteromonas translucida TAC125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZOO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZOO FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2zoo|  PDB=2zoo  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zoo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zoo OCA], [https://pdbe.org/2zoo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zoo RCSB], [https://www.ebi.ac.uk/pdbsum/2zoo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zoo ProSAT]</span></td></tr>
 
</table>
===Crystal structure of nitrite reductase from Pseudoalteromonas haloplanktis TAC125===
== Function ==
 
[https://www.uniprot.org/uniprot/Q3IGF7_PSET1 Q3IGF7_PSET1]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2ZOO is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis_tac125 Pseudoalteromonas haloplanktis tac125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZOO OCA].  
Check<jmol>
[[Category: Pseudoalteromonas haloplanktis tac125]]
  <jmolCheckbox>
[[Category: Nojiri, M.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zo/2zoo_consurf.spt"</scriptWhenChecked>
[[Category: Suzuki, S.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Tsuda, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Yamaguchi, K.]]
  </jmolCheckbox>
[[Category: Electron transfer]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zoo ConSurf].
[[Category: Electron transport]]
<div style="clear:both"></div>
[[Category: Heme]]
__TOC__
[[Category: Iron]]
</StructureSection>
[[Category: Metal-binding]]
[[Category: Large Structures]]
[[Category: Nitrite]]
[[Category: Pseudoalteromonas translucida TAC125]]
[[Category: Oxidoreductase]]
[[Category: Nojiri M]]
[[Category: Transport]]
[[Category: Suzuki S]]
 
[[Category: Tsuda A]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 25 08:23:46 2010''
[[Category: Yamaguchi K]]
Retrieved from "https://proteopedia.org/2zoo"