3mip: Difference between revisions

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{{Seed}}
[[Image:3mip.png|left|200px]]


<!--
==I-MsoI re-designed for altered DNA cleavage specificity (-8GCG)==
The line below this paragraph, containing "STRUCTURE_3mip", creates the "Structure Box" on the page.
<StructureSection load='3mip' size='340' side='right'caption='[[3mip]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3mip]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MIP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
{{STRUCTURE_3mip|  PDB=3mip  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mip OCA], [https://pdbe.org/3mip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mip RCSB], [https://www.ebi.ac.uk/pdbsum/3mip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mip ProSAT]</span></td></tr>
 
</table>
===I-MsoI re-designed for altered DNA cleavage specificity (-8GCG)===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
<!--
  <jmolCheckbox>
The line below this paragraph, {{ABSTRACT_PUBMED_20435674}}, adds the Publication Abstract to the page
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mi/3mip_consurf.spt"</scriptWhenChecked>
(as it appears on PubMed at http://www.pubmed.gov), where 20435674 is the PubMed ID number.
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-->
    <text>to colour the structure by Evolutionary Conservation</text>
{{ABSTRACT_PUBMED_20435674}}
  </jmolCheckbox>
 
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mip ConSurf].
==About this Structure==
<div style="clear:both"></div>
3MIP is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MIP OCA].  
__TOC__
 
</StructureSection>
==Reference==
[[Category: Large Structures]]
<ref group="xtra">PMID:20435674</ref><references group="xtra"/>
[[Category: Synthetic construct]]
[[Category: Synthetic construct]]
[[Category: Stoddard, B L.]]
[[Category: Stoddard BL]]
[[Category: Taylor, G K.]]
[[Category: Taylor GK]]
[[Category: De novo protein-dna complex]]
[[Category: Homing nuclease]]
[[Category: Protein-dna complex]]
[[Category: Rosetta design]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct  6 05:38:46 2010''

Latest revision as of 10:25, 21 February 2024

I-MsoI re-designed for altered DNA cleavage specificity (-8GCG)

3mip, resolution 2.40Å

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