Sandbox Reserved 14: Difference between revisions

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New page: <!-- PLEASE DO NOT DELETE THIS TEMPLATE --> {{BioCrys Sandbox}} | To get started: * Click the edit this page tab at the top. Save the page after each step, then edit it again. *...
 
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<!-- PLEASE DO NOT DELETE THIS TEMPLATE -->
<!-- DO NOT DELETE THE TEMPLATE LINE -->
{{BioCrys Sandbox}}
{{Template:Sandbox Reserved Eric Martz}}
| To get started:
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->


    * Click the edit this page tab at the top. Save the page after each step, then edit it again.
<Structure load='1d66' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />


    * Click the 3D button (when editing, above the wikitext box) to insert Jmol, similar to the one below.  
This is the DNA-binding domain of the gal4 transcriptional regulatory protein, bound to DNA.
 
*<scene name='42/421644/Osaka1/1'>Here the DNA is solid</scene>
 
(atoms have van der Waals radii).
You're missing out!
*The DNA-binding surface of the protein has <scene name='42/421644/Osaka1/2'>only positive charges</scene> to bind to the negatively charged DNA phosphate backbone.
 
(<font color="blue">Positive</font>,
You need Java to see the 3D molecule in this box. The 3D molecules are the most important part of Proteopedia.
<font color="red">Negative</font>)
 
Install Java from www.java.com. It's free.
 
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Insert caption here
 
    * show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.  
 
Click here to see what can be achieved green link
 
    * Add a description of your scene.-Ex. " CotA laccase from Bacillus subtilis with two copper centers" -
 
Use the buttons above the wikitext box for bold, italics, links, headlines, etc. More help: Help:Editing |} <!-- PLEASE ADD YOUR CONTENT BELOW HERE -->

Latest revision as of 07:14, 15 May 2014

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
To get started:
  • Click the 'edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Getting Started in Proteopedia, Help:Editing, Main Help Page.

Insert caption here

Drag the structure with the mouse to rotate

This is the DNA-binding domain of the gal4 transcriptional regulatory protein, bound to DNA.

(atoms have van der Waals radii).

  • The DNA-binding surface of the protein has only positive charges to bind to the negatively charged DNA phosphate backbone.

(Positive, Negative)

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