Sandbox Reserved 14: Difference between revisions

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| To get started:
<!-- DO NOT DELETE THE TEMPLATE LINE -->
* Click the ''edit this page'' tab at the top. <font color="red">Save the page after each step, then edit it again.</font>
{{Template:Sandbox Reserved Eric Martz}}
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->


* Click the '''3D''' button (when editing, above the wikitext box) to insert Jmol, similar to the one below.
<Structure load='1d66' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
<applet load='1w6l' size='300' frame='true' align='right' caption='Insert caption here' />


* '''show''' the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
This is the DNA-binding domain of the gal4 transcriptional regulatory protein, bound to DNA.
Click here to see what can be achieved <scene name='Template:Sandbox_Reserved_BioCrys/Metal_centers/5'>green link</scene>
*<scene name='42/421644/Osaka1/1'>Here the DNA is solid</scene>
 
(atoms have van der Waals radii).
* Add a description of your scene.-Ex. " CotA laccase from ''Bacillus subtilis'' with two '''copper centers'''" -
*The DNA-binding surface of the protein has <scene name='42/421644/Osaka1/2'>only positive charges</scene> to bind to the negatively charged DNA phosphate backbone.
Use the buttons above the wikitext box for''' bold''', ''italics'', [[#|links]], <big><big><b>headlines</b></big></big>, etc.
(<font color="blue">Positive</font>,
More help: [[Help:Editing]]
<font color="red">Negative</font>)
|}

Latest revision as of 07:14, 15 May 2014

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
To get started:
  • Click the 'edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Getting Started in Proteopedia, Help:Editing, Main Help Page.

Insert caption here

Drag the structure with the mouse to rotate

This is the DNA-binding domain of the gal4 transcriptional regulatory protein, bound to DNA.

(atoms have van der Waals radii).

  • The DNA-binding surface of the protein has only positive charges to bind to the negatively charged DNA phosphate backbone.

(Positive, Negative)

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