Sandbox Reserved 19: Difference between revisions

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| To get started:
<!-- DO NOT DELETE THE TEMPLATE LINE -->
* Click the ''edit this page'' tab at the top. <font color="red">Save the page after each step, then edit it again.</font>
{{Template:Sandbox Reserved Eric Martz}}
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->


* Click the '''3D''' button (when editing, above the wikitext box) to insert Jmol, similar to the one below.
<Structure load='3i0a' size='400' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
<applet load='1w6l' size='300' frame='true' align='right' caption='Insert caption here' />


* '''show''' the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
<scene name='Sandbox_Reserved_19/3i0a_charge/7'>Charged</scene>
Click here to see what can be achieved <scene name='Template:Sandbox_Reserved_BioCrys/Metal_centers/5'>green link</scene>


* Add a description of your scene.-Ex. " CotA laccase from ''Bacillus subtilis'' with two '''copper centers'''" -  
'''Cationic+''' atoms are colored blue.
Use the buttons above the wikitext box for''' bold''', ''italics'', [[#|links]], <big><big><b>headlines</b></big></big>, etc.
65+, including 25+ with incomplete sidechains.
More help: [[Help:Editing]]
(21 Arg, 44 Lys) (6 His)
|}
 
'''Anionic-''' atoms are colored red.
47-, including 12- with incomplete sidechains.
(22 Asp, 24 Glu, 1 C terminus)
 
 
<scene name='Sandbox_Reserved_19/Polar_hydrophobic/1'>Hydrophobic/Polar</scene>
 
The catalytic pocket is highly conserved, while conservation of the remainder of the surface is more variable. Conserved regions of unknown function deserve investigation because they are likely to have important functions.
 
 
<scene name='Sandbox_Reserved_19/3i0a_evolutionary_conserved/1'>Evolutionary Conservation</scene>
[[Image:Conserve.jpg]]

Latest revision as of 09:42, 14 May 2013

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
To get started:
  • Click the 'edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Getting Started in Proteopedia, Help:Editing, Main Help Page.

Insert caption here

Drag the structure with the mouse to rotate

Charged

Cationic+ atoms are colored blue. 65+, including 25+ with incomplete sidechains. (21 Arg, 44 Lys) (6 His)

Anionic- atoms are colored red. 47-, including 12- with incomplete sidechains. (22 Asp, 24 Glu, 1 C terminus)


Hydrophobic/Polar

The catalytic pocket is highly conserved, while conservation of the remainder of the surface is more variable. Conserved regions of unknown function deserve investigation because they are likely to have important functions.


Evolutionary Conservation

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