3nja: Difference between revisions

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{{Seed}}
[[Image:3nja.png|left|200px]]


<!--
==The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.==
The line below this paragraph, containing "STRUCTURE_3nja", creates the "Structure Box" on the page.
<StructureSection load='3nja' size='340' side='right'caption='[[3nja]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3nja]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chromobacterium_violaceum_ATCC_12472 Chromobacterium violaceum ATCC 12472]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NJA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NJA FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.368&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3nja|  PDB=3nja  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nja FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nja OCA], [https://pdbe.org/3nja PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nja RCSB], [https://www.ebi.ac.uk/pdbsum/3nja PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nja ProSAT]</span></td></tr>
 
</table>
===The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.===
== Function ==
 
[https://www.uniprot.org/uniprot/Q7NXP4_CHRVO Q7NXP4_CHRVO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3NJA is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NJA OCA].  
Check<jmol>
[[Category: Chromobacterium violaceum]]
  <jmolCheckbox>
[[Category: Feldmann, B.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nj/3nja_consurf.spt"</scriptWhenChecked>
[[Category: Joachimiak, A.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Tan, K.]]
  </jmolCheckbox>
[[Category: Wu, R.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3nja ConSurf].
[[Category: Mcsg]]
<div style="clear:both"></div>
[[Category: Midwest center for structural genomic]]
__TOC__
[[Category: Protein structure initiative]]
</StructureSection>
[[Category: Psi-2]]
[[Category: Chromobacterium violaceum ATCC 12472]]
[[Category: Structural genomic]]
[[Category: Large Structures]]
[[Category: Unknown function]]
[[Category: Feldmann B]]
 
[[Category: Joachimiak A]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 13 14:26:50 2010''
[[Category: Tan K]]
[[Category: Wu R]]

Latest revision as of 09:28, 30 October 2024

The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.

3nja, resolution 2.37Å

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