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==Introduction==
<StructureSection load='1cii' size='340' side='right' caption='Crystal structure of Colicin Ia, the first colicin to be identified, [[1cii]].  ' scene=''>


{{STRUCTURE_2k5x |  PDB=2k5x  |  SCENE=  }}
__TOC__


Colicins are a type of bacteriocin - peptide and protein antibiotics released by bacteria to kill other bacteria of the same species. Bacteriocins are named after their species of origin; colicins are so-called because they are produced by <i>E. Coli</i>. Because of their narrow killing spectrum which focuses primarily on the species which has made the peptide, bacteriocins are important in microbial biodiversity and the stable co-existence of the bacterial populations.
==Function==


Colicin peptides are plasmid-encoded. The peptide is released by the cell into the area surrounding it, and then parasitises proteins present in the host cell membrane to translocate across into the host cell. Many protein-protein interactions are involved in the cell entry, and the main system is involved in the grouping of colicins into two families: Group A colicins use the Tol system to enter the host cell, and Group B use the Ton system. Once inside the host cell, the cell killing follows 1st order kinetics - ie one molecule is theoretically sufficient to kill the cell.  
'''Colicins''' are a type of bacteriocin - peptide and protein antibiotics released by bacteria to kill other bacteria of the same species, in order to provide a competitive advantage for nutrient acquisition <ref> PMID: 16166536 </ref>. Bacteriocins are named after their species of origin; colicins are so-called because they are produced by <i>E. Coli</i><ref>PMID: 17347522 </ref>. Because of their narrow killing spectrum which focuses primarily on the species which has made the peptide (or occasionally closely related species<ref> PMID: 12423779 </ref>), bacteriocins are important in microbial biodiversity and the stable co-existence of the bacterial populations<ref> PMID: 11792831 </ref><ref>PMID: 12110887 </ref>.
 
Colicin peptides are plasmid-encoded. The peptide is released by the cell into the area surrounding it, and then parasitises proteins present in the host cell membrane to translocate across into the host cell. Many protein-protein interactions are involved in the cell entry, and the main system is involved in the grouping of colicins into two families: Group A colicins use the [[Tol]] system to enter the host cell, and Group B use the [[Ton]] system. Once inside the host cell, the cell killing follows 1st order kinetics - ie one molecule is theoretically sufficient to kill the cell<ref> PMID: 7577966 </ref>.
*'''Colicin-A''' see [[Colicin-A]]
*'''Colicin-B''' forms small, ion-permeable channels.  It inhibits the transport of Pro and enhances the transport of methylglucoside<ref> PMID:2419320 </ref>.  
*'''Colicin-D''' cleaves the anticodon loop of tRNAArg<ref> PMID:15014439 </ref>
*'''Colicin-E1''' binds to TolC and plug channels of Gram-negative bacteria<ref> PMID:35199644 </ref>
*'''Colicin-E2''' and '''Colicin-E9''' bind to BtuB and cleaves the target DNA<ref> PMID:17416663 </ref>, <ref> PMID:15995205 </ref>
*'''Colicin-E3''' cleaves the ribosome A site<ref> PMID:11741540 </ref>
*'''Colicin-E5''' cleaves tRNA which contain the nucleotide queuosine<ref> PMID:16060658 </ref>
*'''Colicin-E7''' binds to immunity protein 7<ref> PMID:10368275 </ref>
*'''Colicin-Ia''' see [[Colicin-Ia]]
*'''Colicin-M''' cleaves peptidoglycans by hydrolysing their phosphoester bonds<ref> PMID:23176510 </ref>


The structure of all colicins, of which over 20 have been identified, follows a 3 domain design:
The structure of all colicins, of which over 20 have been identified, follows a 3 domain design:
<br>At the N terminus is the Translocation domain (T-)
<br>At the N terminus is the [[Translocation domain]] (T-): Residues <scene name='Colicin/Tdomaincolia/2'>1 to ~ 190</scene> in ColIa.
<br>The Receptor binding domain is at the centre of the peptide (R-)
<br>The Receptor binding domain is at the centre of the peptide (R-): Residues <scene name='Colicin/Rdomaincolia/1'>~190 to 451</scene> in ColIa.
<br>The C terminus contains the Cytotoxic domain (C-).
<br>The C terminus contains the Cytotoxic domain (C-): Residues <scene name='Colicin/Cdomaincolia/1'>452 to 626</scene> in ColIa<ref> PMID: 7543362 </ref>.
[[Image: Colicin_Domain_structure.png|500px|thumb| The 3 domain structure of all colicins]]
 
Some colicins exhibit [[DNase Activity]] and others [[TRNase activity]]. For more details see also <br />
*[[Pore Formation]]<br />
*[[Translocation domain]]<br />
*[[H-N-H motif]]<br />
*[[16s rRNase activity]]<br />
*[[Cloacin DF13]].
*[[Colicin Immunity Protein]]
 
==Synthesis, Production and Release==
 
Synthesis of many colicins is repressed by the LexA protein, which is part of the SOS regulon<ref> PMID: 6327609 </ref>.
 
[[Image: Colicin_operon.png|500px|thumb| The structure of a typical colicin operon, highlighting the 3 proteins encoded together.]]
 
==Targeting and Receptors==
 
Colicins vary significantly in the receptors that they target to initiate their uptake. The majority of the group A colicins use the [[BtuB]] receptor, which is present on ''E. coli'' as a vitamin B12 uptake receptor. Once bound to the receptor, the coiled-coil receptor binding domain unfolds, in an essential step that removes the immunity protein and triggers translocation<ref> PMID: 15231784 </ref>. Other colicins use other receptors - generally involved in the uptake of small metabolite growth factors.
 
==Colicin Uptake==
 
Colicins are divided into two groups depending on the method of uptake which they target. Group A colicins use the Tol system to bind to and enter the target cell, and group B use the Ton system. The Tol system consists of 5 proteins - [[TolA]], [[TolB]], [[TolR]], [[TolQ]] and [[Pal]]<ref> PMID: 12423780 </ref>, and group A proteins using this often recruit a second co-receptor involved in translocation, usually [[OmpF]] or [[TolC]], but could be [[OmpC]] and [[PhoE]]<ref> PMID: 6281233 </ref>. The Ton system consists of [[TonB]], [[ExbB]] and [[ExbD]]<ref> PMID: 12423780 </ref>, and no known co-receptor is utilised in translocation<ref> PMID: 17347522 </ref>.It could be possible that Ton-dependent colicins are indiscriminate in use of coreceptors, or that the colicins move down the outside wall of a &beta; barrel protein<ref> PMID: 9720908 </ref>. It is known that colicins do unfold during translocation, but the peptides resulting from this exceed the diameter of pores formed by any of the molecules mentioned above<ref> PMID: 1537329 </ref><ref> PMID: 1380671 </ref>. However, while unfolding does occur, this is not induced by receptor binding in either Tol or Ton dependent colicins<ref> PMID: 17464289 </ref>.
 
Understanding how the colicins can cross the membrane is highly important, as if this could be targeted and exploited it could be useful for novel therapeutic agents<ref> PMID: 15044477 </ref>. It is also estimated that a single colicin molecule is sufficient to kill the bacterial cell, following first order kinetics<ref> PMID: 4860260 </ref>.
 
==Killing Activities==
 
Colicins kill their target cell through a variety of different methods. The main killing activities are carried out through [[Pore Formation]], [[DNase Activity]] and [[16s rRNase activity]], and some colicins also exhibit [[tRNase activity]].
 
The killing activities carried out by colicins could be used medicinally as an alternative to antibiotics in the case where the specific strain of ''E. coli'' can be identified<ref> PMID: 17724148 </ref>, and as potential natural replacements for food preservatives<ref> PMID: 15251279 </ref>.
 


{| class="wikitable" style="text-align:left"
{| class="wikitable" style="text-align:left"
  |+ List of colicins, with their translocation proteins and cytotoxic activity
  |+ List of colicins, with their translocation proteins and cytotoxic activity
  !    Colicin !! Group !! OM Receptor !! Translocation Proteins !! Cytotoxic activity  
  !    Colicin !! Group !! OM Receptor !! Translocation Proteins !! Cytotoxic activity !! Immunity protein
   |-
   |-
  | Col A ||  A ||  BtuB || OmpF/TolQRAB ||  Pore-forming
  | [[Colicin A]] ||  A ||  BtuB || OmpF/[[Tol]]QRAB ||  Pore-forming || [[Colicin_Immunity_Protein]]<ref> PMID: 11673448 </ref>
|-
|-
  | Col E1 ||  A ||  BtuB || TolC/TolAQ ||  Pore-forming  
  | [[Colicin E1]] ||  A ||  BtuB || TolC/TolAQ ||  Pore-forming || [[ImmE1]]<ref> PMID: 1708384 </ref>
|-
|-
  | Col E2 ||  A ||  BtuB || OmpF/TolQRAB ||  DNase
  | [[Colicin E2]] ||  A ||  BtuB || OmpF/TolQRAB ||  DNase || [[Im2]]<ref> PMID: 18990718 </ref>
|-
|-
  | Col E3 ||  A ||  BtuB || OmpF/TolQRAB ||  16s rRNase
  | [[Colicin E3]] ||  A ||  BtuB || OmpF/TolQRAB ||  16s rRNase || [[Im3]]<ref> PMID: 4588566 </ref>
|-
|-
  | Col E4 ||  A ||  BtuB || OmpF/TolQRAB ||  16s rRNase
  | [[Colicin E4]] ||  A ||  BtuB || OmpF/TolQRAB ||  16s rRNase || [[Im4]]<ref> PMID: 11092930 </ref>
|-
|-
  | Col E5 ||  A ||  BtuB || OmpF/TolQRAB ||  tRNase
  | [[Colicin E5]] ||  A ||  BtuB || OmpF/TolQRAB ||  tRNase || [[ImmE5]]<ref> PMID: 2549375 </ref>
|-
|-
  | Col E6 ||  A ||  BtuB || OmpF/TolQRAB ||  16s rRNase
  | [[Colicin E6]] ||  A ||  BtuB || OmpF/TolQRAB ||  16s rRNase || [[ImmE6]]<ref> PMID: 2687234 </ref>
|-
|-
  | Col E7 ||  A ||  BtuB || OmpF/TolQRAB ||  DNase
  | [[Colicin E7]] ||  A ||  BtuB || OmpF/TolQRAB ||  DNase || [[Im7]]<ref> PMID: 9639578 </ref>
|-
| [[Colicin E8]] ||  A ||  BtuB || OmpF/TolQRAB ||  DNase || [[Im8]]<ref> PMID: 16109424 </ref>
|-
|-
  | Col E8 ||  A ||  BtuB || OmpF/TolQRAB ||  DNase
  | [[Colicin E9]] ||  A ||  BtuB || OmpF/TolQRAB ||  DNase || [[Im9]]<ref> PMID: 8755730 </ref>
|-
|-
  | Col E9 ||  A ||  BtuB || OmpF/TolQRAB ||  DNase
  | [[Colicin N]] ||  A ||  OmpF || OmpF/TolQRA ||  Pore-forming || [[Cni]]<ref> PMID: 2668695 </ref>
|-
|-
  | Col N ||  A ||  OmpF || OmpF/TolQRA ||  Pore-forming
  | [[Colicin S4]] ||  A ||  OmpW || OmpF/TolQRAB ||  Pore-forming || [[Csi]]<ref> PMID: 10348872</ref>
|-
|-
  | Col S4 ||  A ||  OmpW || OmpF/TolQRAB ||  Pore-forming
  | [[Colicin K]] ||  A ||  Tsx || OmpF/TolQRAB ||  Pore-forming || ?
|-
|-
  | Col K ||  A ||  Tsx || OmpF/TolQRAB ||  Pore-forming
  | [[Cloacin DF13]] ||  A ||  lutA <ref>PMID: 2013565 </ref>|| TolQRA <ref> PMID: 8419302 </ref> ||  16s rRNase <ref> PMID: 768982 </ref> ||
|-
|-
  | Cloacin DF 13 ||  A ||  lutA || TolQRA ||  16s rRNase
  | [[Colicin U]] ||  A ||  ? || OmpAF, TolQRAB ||  Pore-forming || [[Cui]]<ref> PMID: 9244283 </ref>
|-
|-
  | Col U ||  A ||  ? || OmpAF, TolQRAB ||  Pore-forming
  | [[Colicin 5]] ||  B ||  Tsx || TolC/[[Ton]]B, [[ExbB]]D ||  Pore-forming || [[Cfi]]<ref> PMID: 7592492 </ref>
|-
|-
  | Col 5 ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming
  | [[Colicin 6]] ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming || ?
|-
|-
  | Col 6 ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming
  | [[Colicin 7]] ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming || ?
|-
|-
  | Col 7 ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming
  | [[Colicin 8]] ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming || ?
|-
|-
  | Col 8 ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming
  | [[Colicin 9]] ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming || ?
|-
|-
  | Col 9 ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming
  | [[Colicin 10]] ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming || [[Cti]]<ref> PMID: 7651137 </ref>
|-
|-
  | Col 10 ||  B ||  Tsx || TolC/TonB, ExbBD ||  Pore-forming
  | [[Colicin Ia]] ||  B ||  Cir || Cir/TonB, ExbBD ||  Pore-forming || [[Iia]]<ref> PMID: 6273383 </ref>
|-
|-
  | Col-la ||  B ||  Cir || Cir/TonB, ExbBD ||  Pore-forming
  | [[Colicin Ib]] ||  B ||  Cir || Cir/TonB, ExbBD ||  Pore-forming || [[Imm]]
|-
|-
  | Col-lb ||  B ||  Cir || Cir/TonB, ExbBD ||  Pore-forming
  | [[Colicin B]] ||  B ||  FepA || ?/TonB, ExbBD ||  Pore-forming || [[Cbi]]<ref> PMID: 2830463 </ref>
|-
|-
  | Col B ||  B ||  FepA || ?/TonB, ExbBD || Pore-forming
  | [[Colicin D]] ||  B ||  FepA || ?/TonB, ExbBD || tRNase || [[ImmD]]<ref> PMID: 15014439 </ref>
|-
|-
  | Col D ||  B ||  FepA || ?/TonB, ExbBD || tRNase
  | [[Colicin M]] ||  B ||  FhuA || ?/TonB, ExbBD || Inhibition of PG synthesis || [[Cmi]]<ref> PMID: 6094976 </ref>
|-
|-
  | Col M ||  B ||  FhuA || ?/TonB, ExbBD ||  Inhibition of PG synthesis
  | [[Colicin V]] ||  B ||  Cir? <ref> PMID: 1943995 </ref> || TonB, ExbB ||  Disruption of membrane potential || [[Cvi]]<ref> PMID: 6271732 </ref>
|-
|-
  | Col V ||  B ||  Cir? || TonB, ExbB ||  Disruption of membrane potential
  | [[Colicin Js]] ||  B ||  CjrBC <ref> PMID: 12423780 </ref> || ExbBD, VirB <ref> PMID: 11395459 </ref> ||  ? || [[Cji]] <ref> PMID: 11395458 </ref>
|-
|-
  | Col Js ||  B ||  CjrBC || ExbBD, VirB ||  ?
  | [[Colicin Y]] ||  ? ||  ? || ? ||  Pore-forming <ref> PMID: 10878131 </ref> || [[Cyi]]<ref> PMID: 16630264 </ref>
|-
| Col Y ||  ? ||  ? || ? ||  Pore-forming


|}
|}
Table taken from <ref>PMID: 21060316 </ref> except where indicated.
==3D structure of Colicin==
[[Colicin 3D structures]]
</StructureSection>
==References==
<references/>
[[Category:Topic Page]]
Retrieved from "https://proteopedia.org/Colicin"