3oq2: Difference between revisions

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{{Seed}}
[[Image:3oq2.jpg|left|200px]]


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==Structure of a CRISPR associated protein Cas2 from Desulfovibrio vulgaris==
The line below this paragraph, containing "STRUCTURE_3oq2", creates the "Structure Box" on the page.
<StructureSection load='3oq2' size='340' side='right'caption='[[3oq2]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3oq2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OQ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OQ2 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
{{STRUCTURE_3oq2|  PDB=3oq2  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oq2 OCA], [https://pdbe.org/3oq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oq2 RCSB], [https://www.ebi.ac.uk/pdbsum/3oq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oq2 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CAS2_DESVH CAS2_DESVH] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (By similarity).


===Structure of a CRISPR associated protein Cas2 from Desulfovibrio vulgaris===
==See Also==
 
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_21139194}}, adds the Publication Abstract to the page
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
(as it appears on PubMed at http://www.pubmed.gov), where 21139194 is the PubMed ID number.
[[Category: Large Structures]]
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[[Category: Samai P]]
{{ABSTRACT_PUBMED_21139194}}
[[Category: Shuman S]]
 
[[Category: Smith P]]
==About this Structure==
3OQ2 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OQ2 OCA].
 
==Reference==
<ref group="xtra">PMID:21139194</ref><references group="xtra"/>
[[Category: Desulfovibrio vulgaris]]
[[Category: Samai, P.]]
[[Category: Shuman, S.]]
[[Category: Smith, P.]]
[[Category: Crispr]]
[[Category: Ferredoxin fold]]
[[Category: Immune system]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 22 09:57:23 2010''

Latest revision as of 10:35, 21 February 2024

Structure of a CRISPR associated protein Cas2 from Desulfovibrio vulgaris

3oq2, resolution 1.35Å

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