3i6v: Difference between revisions

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[[Image:3i6v.png|left|200px]]


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==Crystal structure of a periplasmic His/Glu/Gln/Arg/opine family-binding protein from Silicibacter pomeroyi in complex with lysine==
The line below this paragraph, containing "STRUCTURE_3i6v", creates the "Structure Box" on the page.
<StructureSection load='3i6v' size='340' side='right'caption='[[3i6v]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3i6v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I6V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I6V FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_3i6v|  PDB=3i6v  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i6v OCA], [https://pdbe.org/3i6v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i6v RCSB], [https://www.ebi.ac.uk/pdbsum/3i6v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i6v ProSAT]</span></td></tr>
 
</table>
===Crystal structure of a periplasmic His/Glu/Gln/Arg/opine family-binding protein from Silicibacter pomeroyi in complex with lysine===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5LTV6_RUEPO Q5LTV6_RUEPO]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
[[3i6v]] is a 1 chain structure of [[ABC transporter]] with sequence from [http://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I6V OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/3i6v_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i6v ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[ABC transporter]]
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Ruegeria pomeroyi]]
[[Category: Ruegeria pomeroyi]]
[[Category: Almo, S C.]]
[[Category: Almo SC]]
[[Category: Bain, K T.]]
[[Category: Bain KT]]
[[Category: Bonanno, J B.]]
[[Category: Bonanno JB]]
[[Category: Burley, S K.]]
[[Category: Burley SK]]
[[Category: Miller, S.]]
[[Category: Miller S]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Romero R]]
[[Category: Romero, R.]]
[[Category: Rutter M]]
[[Category: Rutter, M.]]
[[Category: Sauder JM]]
[[Category: Sauder, J M.]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Nysgxrc]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Transport protein]]
[[Category: Transporter]]
Retrieved from "https://proteopedia.org/3i6v"