2pbl: Difference between revisions

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[[Image:2pbl.png|left|200px]]


<!--
==Crystal structure of a putative thioesterase (tm1040_2492) from silicibacter sp. tm1040 at 1.79 A resolution==
The line below this paragraph, containing "STRUCTURE_2pbl", creates the "Structure Box" on the page.
<StructureSection load='2pbl' size='340' side='right'caption='[[2pbl]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2pbl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_sp._TM1040 Ruegeria sp. TM1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PBL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_2pbl|  PDB=2pbl  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbl OCA], [https://pdbe.org/2pbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pbl RCSB], [https://www.ebi.ac.uk/pdbsum/2pbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pbl ProSAT], [https://www.topsan.org/Proteins/JCSG/2pbl TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of putative thioesterase (YP_614486.1) from Silicibacter sp. TM1040 at 1.79 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/Q1GDP2_RUEST Q1GDP2_RUEST]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
[[2pbl]] is a 4 chain structure of [[Lipase]] with sequence from [http://en.wikipedia.org/wiki/Ruegeria_sp._tm1040 Ruegeria sp. tm1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBL OCA].  
Check<jmol>
 
  <jmolCheckbox>
==See Also==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pbl_consurf.spt"</scriptWhenChecked>
*[[Lipase]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Ruegeria sp. tm1040]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: JCSG, Joint Center for Structural Genomics.]]
  </jmolCheckbox>
[[Category: Jcsg]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pbl ConSurf].
[[Category: Joint center for structural genomic]]
<div style="clear:both"></div>
[[Category: Protein structure initiative]]
__TOC__
[[Category: Psi-2]]
</StructureSection>
[[Category: Putative thioesterase]]
[[Category: Large Structures]]
[[Category: Structural genomic]]
[[Category: Ruegeria sp. TM1040]]
[[Category: Unknown function]]
[[Category: Yp_614486 1]]
Retrieved from "https://proteopedia.org/2pbl"