2yyz: Difference between revisions

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New page: left|200px<br /><applet load="2yyz" size="350" color="white" frame="true" align="right" spinBox="true" caption="2yyz, resolution 2.11Å" /> '''Crystal structure of...
 
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[[Image:2yyz.jpg|left|200px]]<br /><applet load="2yyz" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2yyz, resolution 2.11&Aring;" />
'''Crystal structure of Sugar ABC transporter, ATP-binding protein'''<br />


==About this Structure==
==Crystal structure of Sugar ABC transporter, ATP-binding protein==
2YYZ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=PEG:'>PEG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYZ OCA].
<StructureSection load='2yyz' size='340' side='right'caption='[[2yyz]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Thermotoga maritima]]
<table><tr><td colspan='2'>[[2yyz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YYZ FirstGlance]. <br>
[[Category: Bessho, Y.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.11&#8491;</td></tr>
[[Category: Ethayathullah, A.S.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: Kaur, P.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yyz OCA], [https://pdbe.org/2yyz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yyz RCSB], [https://www.ebi.ac.uk/pdbsum/2yyz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yyz ProSAT], [https://www.topsan.org/Proteins/RSGI/2yyz TOPSAN]</span></td></tr>
[[Category: Padmanabhan, B.]]
</table>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
== Function ==
[[Category: Singh, T.P.]]
[https://www.uniprot.org/uniprot/Q9WYQ2_THEMA Q9WYQ2_THEMA]  
[[Category: Yokoyama, S.]]
== Evolutionary Conservation ==
[[Category: PEG]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: SO4]]
Check<jmol>
[[Category: alpha and beta proteins (a/b) class]]
  <jmolCheckbox>
[[Category: atp binding]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yyz_consurf.spt"</scriptWhenChecked>
[[Category: national project on protein structural and functional analyses]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: nppsfa]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: riken structural genomics/proteomics initiative]]
  </jmolCheckbox>
[[Category: rsgi]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yyz ConSurf].
[[Category: structural genomics]]
<div style="clear:both"></div>
[[Category: sugar transport]]
[[Category: tm0421]]
[[Category: transport protein]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:28:31 2008''
==See Also==
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermotoga maritima MSB8]]
[[Category: Bessho Y]]
[[Category: Ethayathullah AS]]
[[Category: Kaur P]]
[[Category: Padmanabhan B]]
[[Category: Singh TP]]
[[Category: Yokoyama S]]

Latest revision as of 09:12, 25 October 2023

Crystal structure of Sugar ABC transporter, ATP-binding protein

2yyz, resolution 2.11Å

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