2yzg: Difference between revisions

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New page: left|200px<br /><applet load="2yzg" size="350" color="white" frame="true" align="right" spinBox="true" caption="2yzg, resolution 2.30Å" /> '''Crystal structure of...
 
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[[Image:2yzg.jpg|left|200px]]<br /><applet load="2yzg" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2yzg, resolution 2.30&Aring;" />
'''Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8'''<br />


==About this Structure==
==Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8==
2YZG is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Active as [http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZG OCA].
<StructureSection load='2yzg' size='340' side='right'caption='[[2yzg]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
[[Category: D-alanine--D-alanine ligase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2yzg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZG FirstGlance]. <br>
[[Category: Thermus thermophilus]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
[[Category: Kitamura, Y.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Kuramitsu, S.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzg OCA], [https://pdbe.org/2yzg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzg RCSB], [https://www.ebi.ac.uk/pdbsum/2yzg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzg ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzg TOPSAN]</span></td></tr>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
</table>
[[Category: Yokoyama, S.]]
== Function ==
[[Category: cell shape]]
[https://www.uniprot.org/uniprot/DDL_THET8 DDL_THET8] Cell wall formation.[HAMAP-Rule:MF_00047]
[[Category: d-alanine:d-alanine ligase]]
== Evolutionary Conservation ==
[[Category: national project on protein structural and functional analyses]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: nppsfa]]
Check<jmol>
[[Category: peptidoglycan synthesis]]
  <jmolCheckbox>
[[Category: riken structural genomics/proteomics initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzg_consurf.spt"</scriptWhenChecked>
[[Category: rsgi]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: structural genomics]]
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzg ConSurf].
<div style="clear:both"></div>


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:28:37 2008''
==See Also==
*[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Kitamura Y]]
[[Category: Kuramitsu S]]
[[Category: Yokoyama S]]
Retrieved from "https://proteopedia.org/2yzg"