2rir: Difference between revisions
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New page: left|200px<br /><applet load="2rir" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rir, resolution 2.790Å" /> '''Crystal structure o... |
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== | ==Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis== | ||
<StructureSection load='2rir' size='340' side='right'caption='[[2rir]], [[Resolution|resolution]] 2.79Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2rir]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RIR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RIR FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.79Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rir OCA], [https://pdbe.org/2rir PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rir RCSB], [https://www.ebi.ac.uk/pdbsum/2rir PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rir ProSAT], [https://www.topsan.org/Proteins/MCSG/2rir TOPSAN]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/DPAA_BACSU DPAA_BACSU] Together with DpaB, catalyzes the conversion of dihydrodipicolinate to dipicolinate (DPA), which constitutes up to 10% of the dry weight of the spore.<ref>PMID:8345520</ref> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ri/2rir_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rir ConSurf]. | |||
<div style="clear:both"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Bacillus subtilis]] | [[Category: Bacillus subtilis]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Joachimiak | [[Category: Joachimiak A]] | ||
[[Category: Moy S]] | |||
[[Category: Moy | [[Category: Osipiuk J]] | ||
[[Category: Osipiuk | [[Category: Quartey P]] | ||
[[Category: Quartey | |||
Latest revision as of 09:30, 6 November 2024
Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis
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