1dd4: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
m Protected "1dd4" [edit=sysop:move=sysop]
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1dd4.png|left|200px]]


<!--
==Crystal structure of ribosomal protein l12 from thermotoga maritim==
The line below this paragraph, containing "STRUCTURE_1dd4", creates the "Structure Box" on the page.
<StructureSection load='1dd4' size='340' side='right'caption='[[1dd4]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1dd4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DD4 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dd4 OCA], [https://pdbe.org/1dd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dd4 RCSB], [https://www.ebi.ac.uk/pdbsum/1dd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dd4 ProSAT]</span></td></tr>
{{STRUCTURE_1dd4|  PDB=1dd4  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RL7_THEMA RL7_THEMA] Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/1dd4_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dd4 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Protein L12, the only multicopy component of the ribosome, is presumed to be involved in the binding of translation factors, stimulating factor-dependent GTP hydrolysis. Crystal structures of L12 from Thermotogamaritima have been solved in two space groups by the multiple anomalous dispersion method and refined at 2.4 and 2.0 A resolution. In both crystal forms, an asymmetric unit comprises two full-length L12 molecules and two N-terminal L12 fragments that are associated in a specific, hetero-tetrameric complex with one non-crystallographic 2-fold axis. The two full-length proteins form a tight, symmetric, parallel dimer, mainly through their N-terminal domains. Each monomer of this central dimer additionally associates in a different way with an N-terminal L12 fragment. Both dimerization modes are unlike models proposed previously and suggest that similar complexes may occur in vivo and in situ. The structures also display different L12 monomer conformations, in accord with the suggested dynamic role of the protein in the ribosomal translocation process. The structures have been submitted to the Protein Databank (http://www.rcsb.org/pdb) under accession numbers 1DD3 and 1DD4.


===Crystal structure of ribosomal protein l12 from thermotoga maritim===
Flexibility, conformational diversity and two dimerization modes in complexes of ribosomal protein L12.,Wahl MC, Bourenkov GP, Bartunik HD, Huber R EMBO J. 2000 Jan 17;19(2):174-86. PMID:10637222<ref>PMID:10637222</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
<!--
</div>
The line below this paragraph, {{ABSTRACT_PUBMED_10637222}}, adds the Publication Abstract to the page
<div class="pdbe-citations 1dd4" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 10637222 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_10637222}}
 
==About this Structure==
[[1dd4]] is a 4 chain structure of [[Ribosomal protein L7]] with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DD4 OCA].


==See Also==
==See Also==
*[[Ribosomal protein L7]]
*[[Ribosomal protein L7/L12|Ribosomal protein L7/L12]]
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:10637222</ref><references group="xtra"/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
[[Category: Bartunik, H D.]]
[[Category: Bartunik HD]]
[[Category: Bourenkov, G P.]]
[[Category: Bourenkov GP]]
[[Category: Huber, R.]]
[[Category: Huber R]]
[[Category: Wahl, M C.]]
[[Category: Wahl MC]]
[[Category: Alpha-beta structure]]
[[Category: Dimer formation]]
[[Category: Domain]]
[[Category: Five-helix- bundle]]
[[Category: Flexibility]]
[[Category: Four-helix-bundle]]
[[Category: Helical hairpin]]
[[Category: Hinge region]]
[[Category: Ribosome]]
Retrieved from "https://proteopedia.org/1dd4"