2q1v: Difference between revisions

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New page: left|200px<br /><applet load="2q1v" size="350" color="white" frame="true" align="right" spinBox="true" caption="2q1v, resolution 1.95Å" /> '''Ancestral corticoid ...
 
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[[Image:2q1v.jpg|left|200px]]<br /><applet load="2q1v" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2q1v, resolution 1.95&Aring;" />
'''Ancestral corticoid receptor in complex with cortisol'''<br />


==Overview==
==Ancestral corticoid receptor in complex with cortisol==
The structural mechanisms by which proteins have evolved new functions are, known only indirectly. We report x-ray crystal structures of a resurrected, ancestral protein-the ~450 million-year-old precursor of vertebrate, glucocorticoid (GR) and mineralocorticoid (MR) receptors. Using, structural, phylogenetic, and functional analysis, we identify the, specific set of historical mutations that recapitulate the evolution of, GR's hormone specificity from an MR-like ancestor. These substitutions, repositioned crucial residues to create new receptor-ligand and, intraprotein contacts. Strong epistatic interactions occur because one, substitution changes the conformational position of another site., "Permissive" mutations-substitutions of no immediate consequence, which, stabilize specific elements of the protein and allow it to tolerate, subsequent function-switching changes-played a major role in determining, GR's evolutionary trajectory.
<StructureSection load='2q1v' size='340' side='right'caption='[[2q1v]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[2q1v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q1V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q1V FirstGlance]. <br>
2Q1V is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Unidentified Unidentified] with <scene name='pdbligand=PDN:'>PDN</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q1V OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PDN:17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONE'>PDN</scene></td></tr>
==Reference==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q1v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q1v OCA], [https://pdbe.org/2q1v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q1v RCSB], [https://www.ebi.ac.uk/pdbsum/2q1v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q1v ProSAT]</span></td></tr>
Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis., Ortlund EA, Bridgham JT, Redinbo MR, Thornton JW, Science. 2007 Aug 16;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17702911 17702911]
</table>
[[Category: Protein complex]]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q1/2q1v_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2q1v ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Unidentified]]
[[Category: Unidentified]]
[[Category: Ortlund, E.A.]]
[[Category: Ortlund EA]]
[[Category: Redinbo, M.R.]]
[[Category: Redinbo MR]]
[[Category: GOL]]
[[Category: PDN]]
[[Category: common ancestor]]
[[Category: corticoid]]
[[Category: cortisol]]
[[Category: evolution]]
[[Category: mineralocorticoid]]
[[Category: nuclear receptor]]
[[Category: transcription]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:57:26 2008''

Latest revision as of 09:13, 21 February 2024

Ancestral corticoid receptor in complex with cortisol

2q1v, resolution 1.95Å

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