3m13: Difference between revisions

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[[Image:3m13.png|left|200px]]


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==Crystal Structure of the Lys265Arg PEG-crystallized mutant of monomeric sarcosine oxidase==
The line below this paragraph, containing "STRUCTURE_3m13", creates the "Structure Box" on the page.
<StructureSection load='3m13' size='340' side='right'caption='[[3m13]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3m13]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._B-0618 Bacillus sp. B-0618]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M13 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M13 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_3m13| PDB=3m13 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m13 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m13 OCA], [https://pdbe.org/3m13 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m13 RCSB], [https://www.ebi.ac.uk/pdbsum/3m13 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m13 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MSOX_BACB0 MSOX_BACB0] Catalyzes the oxidative demethylation of sarcosine. Can also oxidize other secondary amino acids such as N-methyl-L-alanine.[HAMAP-Rule:MF_00516]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m1/3m13_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m13 ConSurf].
<div style="clear:both"></div>


===Crystal Structure of the Lys265Arg PEG-crystallized mutant of monomeric sarcosine oxidase===
==See Also==
 
*[[Sarcosine oxidase|Sarcosine oxidase]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_20353187}}, adds the Publication Abstract to the page
[[Category: Bacillus sp. B-0618]]
(as it appears on PubMed at http://www.pubmed.gov), where 20353187 is the PubMed ID number.
[[Category: Large Structures]]
-->
[[Category: Chen Z-W]]
{{ABSTRACT_PUBMED_20353187}}
[[Category: Jorns MS]]
 
[[Category: Mathews FS]]
==About this Structure==
[[3m13]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M13 OCA].
 
==Reference==
<ref group="xtra">PMID:20353187</ref><references group="xtra"/>
[[Category: Bacteria]]
[[Category: Sarcosine oxidase]]
[[Category: Chen, Z W.]]
[[Category: Jorns, M S.]]
[[Category: Mathews, F S.]]
[[Category: Cytoplasm]]
[[Category: Fad]]
[[Category: Flavoprotein]]
[[Category: Flavoprotein oxidase]]
[[Category: Oxidoreductase]]

Latest revision as of 10:23, 21 February 2024

Crystal Structure of the Lys265Arg PEG-crystallized mutant of monomeric sarcosine oxidase

3m13, resolution 2.10Å

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