3opy: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3opy.png|left|200px]]


<!--
==Crystal structure of Pichia pastoris phosphofructokinase in the T-state==
The line below this paragraph, containing "STRUCTURE_3opy", creates the "Structure Box" on the page.
<StructureSection load='3opy' size='340' side='right'caption='[[3opy]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3opy]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Komagataella_pastoris_DSMZ_70382 Komagataella pastoris DSMZ 70382]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OPY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3opy| PDB=3opy |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3opy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3opy OCA], [https://pdbe.org/3opy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3opy RCSB], [https://www.ebi.ac.uk/pdbsum/3opy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3opy ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PFKA1_PICPA PFKA1_PICPA] Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.[HAMAP-Rule:MF_03184]<ref>PMID:12125050</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/3opy_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3opy ConSurf].
<div style="clear:both"></div>


===Crystal structure of Pichia pastoris phosphofructokinase in the T-state===
==See Also==
 
*[[Phosphofructokinase 3D structures|Phosphofructokinase 3D structures]]
 
== References ==
<!--
<references/>
The line below this paragraph, {{ABSTRACT_PUBMED_20833871}}, adds the Publication Abstract to the page
__TOC__
(as it appears on PubMed at http://www.pubmed.gov), where 20833871 is the PubMed ID number.
</StructureSection>
-->
[[Category: Komagataella pastoris DSMZ 70382]]
{{ABSTRACT_PUBMED_20833871}}
[[Category: Large Structures]]
 
[[Category: Bruser A]]
==About this Structure==
[[Category: Keim A]]
[[3opy]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Pichia_pastoris Pichia pastoris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OPY OCA].
[[Category: Kirchberger J]]
 
[[Category: Kloos M]]
==Reference==
[[Category: Kuettner EB]]
<ref group="xtra">PMID:20833871</ref><references group="xtra"/>
[[Category: Marek S]]
[[Category: 6-phosphofructokinase]]
[[Category: Schoneberg T]]
[[Category: Pichia pastoris]]
[[Category: Strater N]]
[[Category: Bruser, A.]]
[[Category: Keim, A.]]
[[Category: Kirchberger, J.]]
[[Category: Kloos, M.]]
[[Category: Kuettner, E B.]]
[[Category: Marek, S.]]
[[Category: Schoneberg, T.]]
[[Category: Strater, N.]]

Latest revision as of 10:35, 21 February 2024

Crystal structure of Pichia pastoris phosphofructokinase in the T-state

3opy, resolution 3.05Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3opy&oldid=4066963"