3qu1: Difference between revisions

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~~[[Image:3qu1.jpg|left|200px]]~~

~~<!--~~

==Peptide deformylase from Vibrio cholerae==

~~The line below this paragraph, containing "STRUCTURE_3qu1", creates the "Structure Box" on the page.~~

~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~

== Structural highlights ==

~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~

<table><tr><td colspan='2'>[[3qu1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QU1 OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=3QU1 FirstGlance].

~~or leave the SCENE parameter empty for the default display.~~

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr>

~~-->~~

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

~~{{STRUCTURE_3qu1| PDB=3qu1 | SCENE= }}~~

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=3qu1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qu1 OCA], [https://pdbe.org/3qu1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qu1 RCSB], [https://www.ebi.ac.uk/pdbsum/3qu1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qu1 ProSAT]</td></tr>

</table>

===Peptide deformylase from Vibrio cholerae===

== Function ==

[https://www.uniprot.org/uniprot/DEF2_VIBCH DEF2_VIBCH] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).

__TOC__

==~~About this Structure~~==

</StructureSection>

[[3qu1]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QU1 OCA].

[[Category: Large Structures]]

[[Category: ~~Peptide deformylase~~]]

[[Category: Vibrio cholerae]]

[[Category: Anderson~~, W F.]]~~

[[Category: Anderson WF]]

~~[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.~~]]

[[Category: Joachimiak A]]

[[Category: Joachimiak, A.]]

[[Category: Mulligan R]]

[[Category: Mulligan, R.]]

[[Category: Osipiuk J]]

[[Category: Osipiuk, J.]]

[[Category: Papazisi L]]

[[Category: Papazisi, L.]]

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-[[Image:3qu1.jpg|left|200px]]
-<!--
+==Peptide deformylase from Vibrio cholerae==
-The line below this paragraph, containing "STRUCTURE_3qu1", creates the "Structure Box" on the page.
+<StructureSection load='3qu1' size='340' side='right'caption='[[3qu1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3qu1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QU1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QU1 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_3qu1|  PDB=3qu1  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qu1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qu1 OCA], [https://pdbe.org/3qu1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qu1 RCSB], [https://www.ebi.ac.uk/pdbsum/3qu1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qu1 ProSAT]</span></td></tr>
+</table>
-===Peptide deformylase from Vibrio cholerae===
+== Function ==
+[https://www.uniprot.org/uniprot/DEF2_VIBCH DEF2_VIBCH] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).
+__TOC__
-==About this Structure==
+</StructureSection>
-[[3qu1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QU1 OCA].
+[[Category: Large Structures]]
-[[Category: Peptide deformylase]]
 [[Category: Vibrio cholerae]]
-[[Category: Anderson, W F.]]
+[[Category: Anderson WF]]
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+[[Category: Joachimiak A]]
-[[Category: Joachimiak, A.]]
+[[Category: Mulligan R]]
-[[Category: Mulligan, R.]]
+[[Category: Osipiuk J]]
-[[Category: Osipiuk, J.]]
+[[Category: Papazisi L]]
-[[Category: Papazisi, L.]]