2dep: Difference between revisions

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[[Image:2dep.png|left|200px]]


<!--
==Crystal Structure of xylanase B from Clostridium stercorarium F9==
The line below this paragraph, containing "STRUCTURE_2dep", creates the "Structure Box" on the page.
<StructureSection load='2dep' size='340' side='right'caption='[[2dep]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dep]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoclostridium_stercorarium Thermoclostridium stercorarium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dep OCA], [https://pdbe.org/2dep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dep RCSB], [https://www.ebi.ac.uk/pdbsum/2dep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dep ProSAT]</span></td></tr>
{{STRUCTURE_2dep|  PDB=2dep  |  SCENE=  }}
</table>
 
== Function ==
===Crystal Structure of xylanase B from Clostridium stercorarium F9===
[https://www.uniprot.org/uniprot/CEXY_THEST CEXY_THEST] Active toward xylan, carboxymethylcellulose, P-nitrophenyl-beta-D-xylopyranoside and P-nitrophenyl-beta-D-cellobioside.
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_14747719}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 14747719 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dep_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_14747719}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dep ConSurf].
[[2dep]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_stercorarium Clostridium stercorarium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEP OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:14747719</ref><ref group="xtra">PMID:15914908</ref><ref group="xtra">PMID:16233324</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: Clostridium stercorarium]]
[[Category: Thermoclostridium stercorarium]]
[[Category: Fushinobu, S.]]
[[Category: Fushinobu S]]
[[Category: Hayashi, K.]]
[[Category: Hayashi K]]
[[Category: Kitaoka, M.]]
[[Category: Kitaoka M]]
[[Category: Miyanaga, A.]]
[[Category: Miyanaga A]]
[[Category: Nishimoto, M.]]
[[Category: Nishimoto M]]
[[Category: Family 10]]
[[Category: Glycosidase]]
[[Category: Hydrolase]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Structural genomic]]
[[Category: Xylan degradation]]
Retrieved from "https://proteopedia.org/2dep"