2a3l: Difference between revisions

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[[Image:2a3l.png|left|200px]]


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==X-Ray Structure of Adenosine 5'-Monophosphate Deaminase from Arabidopsis Thaliana in Complex with Coformycin 5'-Phosphate==
The line below this paragraph, containing "STRUCTURE_2a3l", creates the "Structure Box" on the page.
<StructureSection load='2a3l' size='340' side='right'caption='[[2a3l]], [[Resolution|resolution]] 3.34&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2a3l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A3L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A3L FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.34&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CF5:COFORMYCIN+5-PHOSPHATE'>CF5</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_2a3l|  PDB=2a3l  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a3l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a3l OCA], [https://pdbe.org/2a3l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a3l RCSB], [https://www.ebi.ac.uk/pdbsum/2a3l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a3l ProSAT], [https://www.topsan.org/Proteins/CESG/2a3l TOPSAN]</span></td></tr>
 
</table>
===X-Ray Structure of Adenosine 5'-Monophosphate Deaminase from Arabidopsis Thaliana in Complex with Coformycin 5'-Phosphate===
== Function ==
 
[https://www.uniprot.org/uniprot/AMPD_ARATH AMPD_ARATH] AMP deaminase plays a critical role in energy metabolism. Essential for the transition from zygote to embryo.<ref>PMID:15918887</ref>  
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_16543243}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 16543243 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/2a3l_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_16543243}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[2a3l]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A3L OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a3l ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
<ref group="xtra">PMID:16543243</ref><ref group="xtra">PMID:16511144</ref><references group="xtra"/>
<references/>
__TOC__
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Allard, S T.M.]]
[[Category: Large Structures]]
[[Category: Bingman, C A.]]
[[Category: Allard STM]]
[[Category: Bitto, E.]]
[[Category: Bingman CA]]
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
[[Category: Bitto E]]
[[Category: Han, B W.]]
[[Category: Han BW]]
[[Category: Phillips, G N.]]
[[Category: Phillips Jr GN]]
[[Category: Wesenberg, G E.]]
[[Category: Wesenberg GE]]
[[Category: Adenosine 5'-monophosphate deaminase]]
[[Category: At2g38280]]
[[Category: Atampd]]
[[Category: Center for eukaryotic structural genomic]]
[[Category: Cesg]]
[[Category: Coformycin 5'-phosphate]]
[[Category: Hydrolase]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
Retrieved from "https://proteopedia.org/2a3l"