2dt8: Difference between revisions

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New page: left|200px<br /><applet load="2dt8" size="350" color="white" frame="true" align="right" spinBox="true" caption="2dt8, resolution 1.480Å" /> '''Fatty Acid Binding ...
 
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[[Image:2dt8.gif|left|200px]]<br /><applet load="2dt8" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2dt8, resolution 1.480&Aring;" />
'''Fatty Acid Binding of a DegV family Protein from Thermus thermophilus'''<br />


==About this Structure==
==Fatty Acid Binding of a DegV family Protein from Thermus thermophilus==
2DT8 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=PLM:'>PLM</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DT8 OCA].
<StructureSection load='2dt8' size='340' side='right'caption='[[2dt8]], [[Resolution|resolution]] 1.48&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Thermus thermophilus]]
<table><tr><td colspan='2'>[[2dt8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DT8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DT8 FirstGlance]. <br>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.48&#8491;</td></tr>
[[Category: Rehse, P.H.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Yokoyama, S.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dt8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dt8 OCA], [https://pdbe.org/2dt8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dt8 RCSB], [https://www.ebi.ac.uk/pdbsum/2dt8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dt8 ProSAT], [https://www.topsan.org/Proteins/RSGI/2dt8 TOPSAN]</span></td></tr>
[[Category: GOL]]
</table>
[[Category: PLM]]
== Evolutionary Conservation ==
[[Category: ZN]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: degv]]
Check<jmol>
[[Category: fatty acid binding]]
  <jmolCheckbox>
[[Category: national project on protein structural and functional analyses]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dt/2dt8_consurf.spt"</scriptWhenChecked>
[[Category: nppsfa]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: riken structural genomics/proteomics initiative]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: rsgi]]
  </jmolCheckbox>
[[Category: structural genomics]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dt8 ConSurf].
 
<div style="clear:both"></div>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 14:48:20 2008''
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Rehse PH]]
[[Category: Yokoyama S]]
Retrieved from "https://proteopedia.org/2dt8"