Barnase: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Michal Harel (talk | contribs)
New page: left|200px|thumb|Crystal Structure of Barnase [[1bni]] {{STRUCTURE_1bni| PDB=1bni | SIZE=300| SCENE= |right|CAPTION=Barnase 1bni }} '''Barnase'''(BA) is a bacteri...
 
No edit summary
 
(28 intermediate revisions by 3 users not shown)
Line 1: Line 1:
[[Image:1bni.png|left|200px|thumb|Crystal Structure of Barnase [[1bni]]]]
<StructureSection load='1brn' size='350' side='right' scene='44/442736/Cv/2' caption='Barnase complex with tetranucleotide (PDB code [[1brn]])'>
{{STRUCTURE_1bni|  PDB=1bni  | SIZE=300| SCENE= |right|CAPTION=Barnase [[1bni]] }}


'''Barnase'''(BA) is a bacterial ribonuclease synthesized and secreted by the bacterium ''Bacillus amyloliquefaciens''.  The inhibitor barstar (BST) binds to it very tightly and prevents it from digestion of the cell’s RNA.
== Function ==


{{TOC limit|limit=2}}
'''Barnase''' (BA, BActerial RiboNucleASE) is a bacterial [[ribonuclease]] synthesized and secreted by the bacterium ''Bacillus amyloliquefaciens''. <ref>PMID:8110767</ref> The inhibitor barstar (BST) binds to it very tightly and prevents it from digestion of the cell’s RNA.


== 3D Structures of Barnase ==
== Relevance ==
 
BA structure was used extensively for studying protein folding.


[[3kch]], [[2f4y]] – BA cross-linked<br />
== Structural highlights ==
[[2f56]] - BA cross-linked + urea<br />
[[2f5w]] - BA cross-linked + thiourea<br />
[[2f5m]] - BA cross-linked + Bromo-ethanol<br />
[[1fw7]], [[1bnr]] – BA - NMR<br />
[[2kf3]] – BA (mutant) – NMR<br />
[[2kf4]], [[1b2x]], [[1a2p]], [[1bni]], [[1bnj]] – BA<br />
[[1yvs]] – BA domain swapped<br />
[[1b20]], [[1b21]], [[1b2z]], [[1bne]], [[1bnf]], [[1bng]], [[1brh]], [[1bri]], [[1brj]], [[1brk]], [[1bns]], [[1brg]], [[1bsa]], [[1bsb]], [[1bsc]], [[1bsd]], [[1bse]], [[1ban]], [[1bao]] – BA (mutant)<br />
[[2kf5]], [[2kf6]], [[1brn]], 1[[rnb]] – BA + polynucleotide


===BA + BST===
BA hydrolyzes RNA at GpN sites where the <scene name='44/442736/Cv/4'>active site positively charged Lys and Arg coordinate the RNA phosphate group</scene> (Lys and Arg are in magenta).


[[3da7]] - BA (mutant) + BST<br />
== 3D Structures of Barnase ==
[[2za4]], [[1brs]], [[1bgs]] – BA + BST<br />
[[Barnase 3D structures]]
[[1x1u]], [[1x1w]], [[1x1x]], [[1x1y]], [[1b27]], [[1b2u]] – BA + BST (mutant)<br />
[[1b3s]], [[1b2s]] - BA (mutant) + BST (mutant)<br />


[[2c4b]] – BA/MCOEETI (mutant)
</StructureSection>


== References ==
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Latest revision as of 14:37, 20 February 2022

Barnase complex with tetranucleotide (PDB code 1brn)

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Jaime Prilusky