Human lactoferrin: Difference between revisions

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New page: {{STRUCTURE_1dsn|PDB=1dsn|SCENE=}} =Amino-Terminal Half-Molecule of Human Lactoferrin= Human lactoferrin, LF, is a protein in the transferrin family. As such, it has the ability to tightly...
 
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{{STRUCTURE_1dsn|PDB=1dsn|SCENE=}}
<StructureSection load='1dsn' size='450' side='right' scene='' caption='Human lactoferrin complex with Fe and carbonate, [[1dsn]]'>
 
=Amino-Terminal Half-Molecule of Human Lactoferrin=
=Amino-Terminal Half-Molecule of Human Lactoferrin=
Human lactoferrin, LF, is a protein in the transferrin family. As such, it has the ability to tightly bind iron in conjunction with a large-scale conformational change associated with iron binding and release.<ref name="faber">PMID:8594202</ref> These properties give lactoferrin the ability to regulate iron, and possibly other metal, ion levels in the fluids and secretions, such as milk,  of animals.<ref name="faber" /> Lactoferrin is folded into two lobes: the N-terminal half, LF<sub>N</sub> ([[1dsn]]), and the C-terminal half, LF<sub>C</sub>. The two LF lobes have 37% homology and very similar tertiary structures; it has been suggested that the two lobes are the product of gene duplication.<ref name="farnaud" /> Each lobe of LF<sub>N</sub> is further subdivided into two similarly sized α and β domains (Figure 1); the <scene name='Sandbox_Reserved_302/Ligand_site/1'>iron binding site</scene> is situated in a deep cleft between the two domains.<ref name="faber" />
Human lactoferrin, LF, is a protein in the transferrin family. As such, it has the ability to tightly bind iron in conjunction with a large-scale conformational change associated with iron binding and release.<ref name="faber">PMID:8594202</ref> These properties give lactoferrin the ability to regulate iron, and possibly other metal, ion levels in the fluids and secretions, such as milk,  of animals.<ref name="faber" /> Lactoferrin is folded into two lobes: the N-terminal half, LF<sub>N</sub> ([[1dsn]]), and the C-terminal half, LF<sub>C</sub>. The two LF lobes have 37% homology and very similar tertiary structures; it has been suggested that the two lobes are the product of gene duplication.<ref name="farnaud" /> Each lobe of LF<sub>N</sub> is further subdivided into two similarly sized α and β domains (Figure 1); the <scene name='Sandbox_Reserved_302/Ligand_site/1'>iron binding site</scene> is situated in a deep cleft between the two domains.<ref name="faber" />
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=Structure=
=Structure=
[[Image:1DSN_Domains.png|left|thumb|'''Figure 1.''' Cartoon illustrating the alpha (green) and beta (magenta) domains of LF<sub>N</sub>]]
[[Image:1DSN_Domains.png|left|thumb|'''Figure 1.''' Cartoon illustrating the alpha (green) and beta (magenta) domains of LF<sub>N</sub>]]
{{Clear}}
The amino-terminal half-molecule of human lactoferrin (LF<sub>N</sub>) is comprised of a single 333 amino acid chain divided into two similarly-sized α and β domains. The iron binding site is located within a deep cleft between the lobes, where iron is bound by <scene name='Sandbox_Reserved_302/Helix_3_and_5/2'>Helices 3 and 5</scene> of the α and β domains, respectively. Iron, which is bound to a carboxylate ion, is bound by Asp60, Ala123, and  Gly124. Although unwound in LF<sub>N</sub>, <scene name='Sandbox_Reserved_302/Pigtail/1'>residues 313 to 333</scene> form a helix when joined to LF<sub>C</sub>, forming the full LF protein.<ref name="faber" />
The amino-terminal half-molecule of human lactoferrin (LF<sub>N</sub>) is comprised of a single 333 amino acid chain divided into two similarly-sized α and β domains. The iron binding site is located within a deep cleft between the lobes, where iron is bound by <scene name='Sandbox_Reserved_302/Helix_3_and_5/2'>Helices 3 and 5</scene> of the α and β domains, respectively. Iron, which is bound to a carboxylate ion, is bound by Asp60, Ala123, and  Gly124. Although unwound in LF<sub>N</sub>, <scene name='Sandbox_Reserved_302/Pigtail/1'>residues 313 to 333</scene> form a helix when joined to LF<sub>C</sub>, forming the full LF protein.<ref name="faber" />


The structure of LF<sub>N</sub> undergoes a dramatic conformational change upon iron binding. Upon iron binding, the two domains of LF<sub>N</sub> undergo a rigid 54.1º rotation about a <scene name='Sandbox_Reserved_302/Hinge/1'>screw axis</scene> that passes through Thr90 and Pro251.<ref name="gerstein">PMID:8230220</ref>
The structure of LF<sub>N</sub> undergoes a dramatic conformational change upon iron binding. Upon iron binding, the two domains of LF<sub>N</sub> undergo a rigid 54.1º rotation about a <scene name='Sandbox_Reserved_302/Hinge/1'>screw axis</scene> that passes through Thr90 and Pro251.<ref name="gerstein">PMID:8230220</ref>
To visualize the <jmol>
  <jmolLink>
    <script>load files "=1CB6" "=1LCF";model 0;cartoon only;domain2 = {(92-249 or 1092-1249)};select domain2 and _C;color green;
structures = [{1.1}, {2.1}];
domains = [[{not domain2},{not domain2}, {alpha and not domain2 and not altloc="B"}], [{domain2}, {(91,1091,250,1250) and *.CA}, {alpha and domain2 and not altloc="B"}],];moveto 1.0 { 880 471 63 56.8} 132.25 0.0 0.0 {2.646000000000001 15.972 -7.2715} 63.954979842981245 {0 0 0} 0 0 0 3.0 0.0 0.0;
script "https://proteopedia.org/wiki/images/a/a2/Storymorph.spt";superimpose(structures,domains,1);model 1;delay 0.5;model 2;delay 0.5;model 1;
</script>
    <text>domain motion</text>
  </jmolLink>
</jmol>, we first load the two structures and superimpose them. You can choose a viewing orientation before pressing the morph button, which will visualize the conformational change from structure 1CB6 to 1LCF and back again<ref>The [[Jmol/Storymorph|Storymorph Jmol scripts]] creates the interpolated coordinates of the morph on the fly.</ref>
.
<jmol>
  <jmolButton>
    <script>morph_palindrome = 1;
morph(15,structures,domains)</script>
    <text>Morph</text>
  </jmolButton>
</jmol> <jmol>
  <jmolButton>
    <script>select protein;spacefill only;</script>
    <text>spacefill</text>
  </jmolButton>
</jmol>


=Function & Application=
=Function & Application=
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[http://en.wikipedia.org/wiki/Lactoferrin Lactoferrin] at Wikipedia
[http://en.wikipedia.org/wiki/Lactoferrin Lactoferrin] at Wikipedia


==3D structures of human lactoferrin==
[[Lactoferrin]]
</StructureSection>
=References=
=References=


<references />
<references />
Page originally authored by Christian Axen
Page originally authored by [http://proteopedia.org/wiki/index.php/User:Christian_Axen Christian Axen]

Latest revision as of 15:56, 11 August 2021

Human lactoferrin complex with Fe and carbonate, 1dsn

Drag the structure with the mouse to rotate

References

Page originally authored by Christian Axen

Proteopedia Page Contributors and Editors (what is this?)

Andrea Gorrell, Karsten Theis, Michal Harel, Alexander Berchansky