3q5c: Difference between revisions

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[[Image:3q5c.jpg|left|200px]]


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==Crystal structure of four-way junction with sticky end==
The line below this paragraph, containing "STRUCTURE_3q5c", creates the "Structure Box" on the page.
<StructureSection load='3q5c' size='340' side='right'caption='[[3q5c]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.501&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [https://pdbe.org/3q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [https://www.ebi.ac.uk/pdbsum/3q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5c ProSAT]</span></td></tr>
{{STRUCTURE_3q5c|  PDB=3q5c  |  SCENE=  }}
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
We report here the crystal structure of the partially self-complementary decameric sequence d(CGGCGGCCGC), which self assembles to form a four-way junction with sticky ends. Each junction binds to four others through Watson-Crick base pairing at the sticky ends to form a rhombic structure. The rhombuses bind to each other and form two dimensional tiles. The tiles stack to form the crystal. The crystal diffracted in the space group P1 to a resolution of 2.5A. The junction has the anti-parallel stacked-X conformation like other junction structures, though the formation of the rhombic net noticeably alters the details of the junction geometry.


===Crystal structure of four-way junction with sticky end===
The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice.,Venkadesh S, Mandal PK, Gautham N Biochem Biophys Res Commun. 2011 Apr 15;407(3):548-51. Epub 2011 Mar 16. PMID:21419105<ref>PMID:21419105</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_21419105}}, adds the Publication Abstract to the page
<div class="pdbe-citations 3q5c" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 21419105 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_21419105}}
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</StructureSection>
==About this Structure==
[[Category: Large Structures]]
[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA].
[[Category: Gautham N]]
 
[[Category: Mandal PK]]
==Reference==
[[Category: Venkadesh S]]
<ref group="xtra">PMID:021419105</ref><references group="xtra"/>
[[Category: Gautham, N.]]
[[Category: Mandal, P K.]]
[[Category: Venkadesh, S.]]

Latest revision as of 17:10, 1 November 2023

Crystal structure of four-way junction with sticky end

3q5c, resolution 2.50Å

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