2d5m: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
New page: left|200px<br /><applet load="2d5m" size="350" color="white" frame="true" align="right" spinBox="true" caption="2d5m, resolution 1.05Å" /> '''Flavoredoxin of Desu...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2d5m.gif|left|200px]]<br /><applet load="2d5m" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2d5m, resolution 1.05&Aring;" />
'''Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)'''<br />


==About this Structure==
==Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)==
2D5M is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=FMN:'>FMN</scene> and <scene name='pdbligand=MES:'>MES</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5M OCA].  
<StructureSection load='2d5m' size='340' side='right'caption='[[2d5m]], [[Resolution|resolution]] 1.05&Aring;' scene=''>
[[Category: Desulfovibrio vulgaris]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2d5m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'Miyazaki_F' Desulfovibrio vulgaris str. 'Miyazaki F']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5M FirstGlance]. <br>
[[Category: Higuchi, Y.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05&#8491;</td></tr>
[[Category: Shibata, N.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Ueda, Y.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5m OCA], [https://pdbe.org/2d5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5m RCSB], [https://www.ebi.ac.uk/pdbsum/2d5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5m ProSAT]</span></td></tr>
[[Category: FMN]]
</table>
[[Category: MES]]
== Function ==
[[Category: ZN]]
[https://www.uniprot.org/uniprot/Q4W5X6_DESVU Q4W5X6_DESVU]  
[[Category: flavoprotein]]
== Evolutionary Conservation ==
[[Category: fmn binding]]
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 18:55:57 2008''
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5m_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5m ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Desulfovibrio vulgaris str. 'Miyazaki F']]
[[Category: Large Structures]]
[[Category: Higuchi Y]]
[[Category: Shibata N]]
[[Category: Ueda Y]]
Retrieved from "https://proteopedia.org/2d5m"