3km3: Difference between revisions

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[[Image:3km3.png|left|200px]]


<!--
==Crystal structure of eoxycytidine triphosphate deaminase from anaplasma phagocytophilum at 2.1A resolution==
The line below this paragraph, containing "STRUCTURE_3km3", creates the "Structure Box" on the page.
<StructureSection load='3km3' size='340' side='right'caption='[[3km3]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3km3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anaplasma_phagocytophilum_str._HZ Anaplasma phagocytophilum str. HZ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KM3 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
{{STRUCTURE_3km3|  PDB=3km3 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3km3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3km3 OCA], [https://pdbe.org/3km3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3km3 RCSB], [https://www.ebi.ac.uk/pdbsum/3km3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3km3 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DCD_ANAPZ DCD_ANAPZ]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/3km3_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3km3 ConSurf].
<div style="clear:both"></div>


===Crystal structure of eoxycytidine triphosphate deaminase from anaplasma phagocytophilum at 2.1A resolution===
==See Also==
 
*[[Deaminase 3D structures|Deaminase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_21359836}}, adds the Publication Abstract to the page
[[Category: Anaplasma phagocytophilum str. HZ]]
(as it appears on PubMed at http://www.pubmed.gov), where 21359836 is the PubMed ID number.
[[Category: Large Structures]]
-->
{{ABSTRACT_PUBMED_21359836}}
 
==About this Structure==
[[3km3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anaplasma_phagocytophilum Anaplasma phagocytophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KM3 OCA].
 
==Reference==
<ref group="xtra">PMID:021359836</ref><references group="xtra"/>
[[Category: Anaplasma phagocytophilum]]
[[Category: DCTP deaminase]]
[[Category: Ssgcid, Seattle Structural Genomics Center for Infectious Disease.]]
[[Category: Anaplasma phagocytophilum]]
[[Category: Decode]]
[[Category: Deoxycytidine triphosphate deaminase]]
[[Category: Hydrolase]]
[[Category: Iodide phasing]]
[[Category: Niaid]]
[[Category: Nih]]
[[Category: Nucleotide metabolism]]
[[Category: Sbri]]
[[Category: Seattle structural genomics center for infectious disease]]
[[Category: Ssgcid]]
[[Category: Structural genomic]]
[[Category: Uw]]

Latest revision as of 10:17, 21 February 2024

Crystal structure of eoxycytidine triphosphate deaminase from anaplasma phagocytophilum at 2.1A resolution

3km3, resolution 2.10Å

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