1vt6: Difference between revisions

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[[Image:1vt6.jpg|left|200px]]


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==Molecular structure of the octamer D(G-G-C-C-G-G-C-C) modified A-DNA==
The line below this paragraph, containing "STRUCTURE_1vt6", creates the "Structure Box" on the page.
<StructureSection load='1vt6' size='340' side='right'caption='[[1vt6]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1vt6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VT6 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vt6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt6 OCA], [https://pdbe.org/1vt6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vt6 RCSB], [https://www.ebi.ac.uk/pdbsum/1vt6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vt6 ProSAT]</span></td></tr>
{{STRUCTURE_1vt6|  PDB=1vt6  |  SCENE=  }}
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The deoxynucleotide fragment d(GpGpCpCpGpGpCpC) was synthesized and crystallized, and its three-dimensional structure was determined by x-ray diffraction techniques to a resolution of 2.25 A. The molecule forms a right-handed double helix in which the two base pairs at either end of the molecule are in the conventional A-DNA conformation, while the central four base pairs have a modified form in which alternate residues have sugar conformations that are closer to those in B-DNA than in A-DNA. The molecules have an intermolecular contact in which the planar terminal guanine . cytosine base pair lies on the flat minor groove surface of the A-DNA helix.


===Molecular structure of the octamer D(G-G-C-C-G-G-C-C) modified A-DNA===
Molecular structure of the octamer d(G-G-C-C-G-G-C-C): modified A-DNA.,Wang AH, Fujii S, van Boom JH, Rich A Proc Natl Acad Sci U S A. 1982 Jul;79(13):3968-72. PMID:6955784<ref>PMID:6955784</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
The line below this paragraph, {{ABSTRACT_PUBMED_6955784}}, adds the Publication Abstract to the page
<div class="pdbe-citations 1vt6" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 6955784 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_6955784}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
[[1vt6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT6 OCA].
[[Category: Fujii S]]
 
[[Category: Rich A]]
==Reference==
[[Category: Van Boom JH]]
<ref group="xtra">PMID:006955784</ref><references group="xtra"/>
[[Category: Wang AH-J]]
[[Category: Boom, J H.Van.]]
[[Category: Fujii, S.]]
[[Category: Rich, A.]]
[[Category: Wang, A H.J.]]
[[Category: A-dna]]
[[Category: Dna]]
[[Category: Double helix]]

Latest revision as of 06:31, 19 July 2023

Molecular structure of the octamer D(G-G-C-C-G-G-C-C) modified A-DNA

1vt6, resolution 2.25Å

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