2ygc: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2ygc.jpg|left|200px]]


<!--
==Structure of vaccinia virus D13 scaffolding protein==
The line below this paragraph, containing "STRUCTURE_2ygc", creates the "Structure Box" on the page.
<StructureSection load='2ygc' size='340' side='right'caption='[[2ygc]], [[Resolution|resolution]] 3.02&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2ygc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vaccinia_virus_Western_Reserve Vaccinia virus Western Reserve]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YGC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YGC FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.02&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2ygc|  PDB=2ygc  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ygc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ygc OCA], [https://pdbe.org/2ygc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ygc RCSB], [https://www.ebi.ac.uk/pdbsum/2ygc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ygc ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The morphogenesis of poxviruses such as vaccinia virus (VACV) sees the virion shape mature from spherical to brick-shaped. Trimeric capsomers of the VACV D13 protein form a transitory, stabilizing lattice on the surface of the initial spherical immature virus particle. The crystal structure of D13 reveals that this major scaffolding protein comprises a double beta barrel "jelly-roll" subunit arranged as pseudo-hexagonal trimers. These structural features are characteristic of the major capsid proteins of a lineage of large icosahedral double-stranded DNA viruses including human adenovirus and the bacteriophages PRD1 and PM2. Structure-based phylogenetic analysis confirms that VACV belongs to this lineage, suggesting that (analogously to higher organism embryogenesis) early poxvirus morphogenesis reflects their evolution from a lineage of viruses sharing a common icosahedral ancestor.


===STRUCTURE OF VACCINIA VIRUS D13 SCAFFOLDING PROTEIN===
Insights into the evolution of a complex virus from the crystal structure of vaccinia virus d13.,Bahar MW, Graham SC, Stuart DI, Grimes JM Structure. 2011 Jul 13;19(7):1011-20. PMID:21742267<ref>PMID:21742267</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
<!--
</div>
The line below this paragraph, {{ABSTRACT_PUBMED_21742267}}, adds the Publication Abstract to the page
<div class="pdbe-citations 2ygc" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 21742267 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_21742267}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
[[2ygc]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Vaccinia_virus Vaccinia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YGC OCA].
[[Category: Vaccinia virus Western Reserve]]
 
[[Category: Bahar MW]]
==Reference==
[[Category: Graham SC]]
<ref group="xtra">PMID:021742267</ref><references group="xtra"/>
[[Category: Grimes JM]]
[[Category: Vaccinia virus]]
[[Category: Stuart DI]]
[[Category: Bahar, M W.]]
[[Category: Graham, S C.]]
[[Category: Grimes, J M.]]
[[Category: Stuart, D I.]]
[[Category: Viral evolution]]
[[Category: Viral protein]]

Latest revision as of 01:32, 21 November 2024

Structure of vaccinia virus D13 scaffolding protein

2ygc, resolution 3.02Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=2ygc&oldid=4271249"