Complexes: Difference between revisions
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m New page: Multi-protein assemblies Many PDB files contain complexes in which a biological molecule is interacting with another biological molecule in a [[Complexes|comple... |
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Many [[PDB file|PDB files]] contain [[Complexes|complexes]] in which a biological molecule is interacting with another biological molecule in a [[Complexes|complex]] or [[Complexes|assembly]]. These interactions, if biologically relevant, can be immensely insightful in shedding light on cellular and extracellular processes. | Many [[PDB file|PDB files]] contain [[Complexes|complexes]] in which a biological molecule is interacting with another biological molecule in a [[Complexes|complex]] or [[Complexes|assembly]]. These interactions, if biologically relevant, can be immensely insightful in shedding light on cellular and extracellular processes. | ||
==Examples== | ==Examples== | ||
* [[Ribosome]] | * [[Ribosome]] | ||
* [[Molecular Playground/T7 RNAP Conformations|T7 RNA Polymerase]] | |||
* [[3ciy|Mouse Toll-like receptor bound to dsRNA]] | * [[3ciy|Mouse Toll-like receptor bound to dsRNA]] | ||
* [[Human Follicle-Stimulating Hormone Complexed with its Receptor]] | * [[Human Follicle-Stimulating Hormone Complexed with its Receptor]] | ||
* [[Platelet-receptor glycoprotein Ib alpha|Platelet-receptor glycoprotein Ib alpha bound to the von Willebrand Factor A1 Domain]] | * [[Platelet-receptor glycoprotein Ib alpha|Platelet-receptor glycoprotein Ib alpha bound to the von Willebrand Factor A1 Domain]] | ||
* [[Plant Viral Protein p19 Suppression of RNA Silencing]] | * [[Plant Viral Protein p19 Suppression of RNA Silencing]] | ||
* [[RecG Bound to Three-Way DNA Junction]] | |||
== | ==See Also== | ||
*[http://www-cryst.bioc.cam.ac.uk/~richard/piccolo/about.php PICCOLO, a comprehensive relational database featuring the details of structurally characterized protein-protein interactions]. | * [[Multi-protein assemblies]] | ||
* [[Biological assembly]] | |||
* [[Crystal contacts]] | |||
* [[X-ray crystallography]] | |||
* [[Ligand]] | |||
==External Resources== | |||
* [http://www-cryst.bioc.cam.ac.uk/~richard/piccolo/about.php PICCOLO, a comprehensive relational database featuring the details of structurally characterized protein-protein interactions]. | |||
* [http://pir.georgetown.edu/pro/ PRO] provides an ontological representation of proteins in complexes. In particular, the authors are working to implement logical and consistent representation of protein complexes. | |||
*[https://www.molnac.unisa.it/BioTools/cocomaps/ COCOMAPS (bioCOmplexes COntact MAPS)] is a web server for analysis and visualization of the interfaces present in biological complexes, such as protein-protein, protein-DNA and protein-RNA complexes, making use of intermolecular contact maps. | |||
* [http://haddock.chem.uu.nl/ The HADDOCK web server] is web server for data-driven biomolecular docking for modeling of biomolecular complexes. | |||
==Literature Citations== | ==Literature Citations== | ||
Literature citations can be found at the respective servers linked above. | |||
Literature citations | |||
