2o8r: Difference between revisions

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New page: left|200px<br /><applet load="2o8r" size="350" color="white" frame="true" align="right" spinBox="true" caption="2o8r, resolution 2.70Å" /> '''Crystal Structure of...
 
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[[Image:2o8r.gif|left|200px]]<br /><applet load="2o8r" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2o8r, resolution 2.70&Aring;" />
'''Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis'''<br />


==About this Structure==
==Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis==
2O8R is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis] with <scene name='pdbligand=SO4:'>SO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA].  
<StructureSection load='2o8r' size='340' side='right'caption='[[2o8r]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
[[Category: Polyphosphate kinase]]
== Structural highlights ==
<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8R FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [https://pdbe.org/2o8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [https://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8r ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q7MTR1_PORGI Q7MTR1_PORGI] Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).[RuleBase:RU003800]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8r_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o8r ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Porphyromonas gingivalis]]
[[Category: Porphyromonas gingivalis]]
[[Category: Single protein]]
[[Category: Adams JM]]
[[Category: Adams, J.M.]]
[[Category: Almo SC]]
[[Category: Almo, S.C.]]
[[Category: Burley SK]]
[[Category: Burley, S.K.]]
[[Category: Dickey M]]
[[Category: Dickey, M.]]
[[Category: Ozyurt S]]
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
[[Category: Patskovsky Y]]
[[Category: Nysgrc, New.York.Structural.Genomics.Research.Consortium.]]
[[Category: Sauder JM]]
[[Category: Ozyurt, S.]]
[[Category: Toro R]]
[[Category: Patskovsky, Y.]]
[[Category: Wasserman SR]]
[[Category: Sauder, J.M.]]
[[Category: Toro, R.]]
[[Category: Wasserman, S.R.]]
[[Category: SO4]]
[[Category: kinase]]
[[Category: new york structural genomics research consortium]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgrc]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomics]]
 
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Retrieved from "https://proteopedia.org/2o8r"