2oqm: Difference between revisions

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New page: left|200px<br /><applet load="2oqm" size="350" color="white" frame="true" align="right" spinBox="true" caption="2oqm, resolution 1.83Å" /> '''Crystal structure of...
 
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[[Image:2oqm.gif|left|200px]]<br /><applet load="2oqm" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2oqm, resolution 1.83&Aring;" />
'''Crystal structure of a DNA damage-inducible protein from DinB family (YP_561575.1) from Shewanella denitrificans OS-217 at 1.83 A resolution'''<br />


==About this Structure==
==Crystal structure of a dinb family member protein (sden_0562) from shewanella denitrificans at 1.83 A resolution==
2OQM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_denitrificans Shewanella denitrificans] with <scene name='pdbligand=CL:'>CL</scene>, <scene name='pdbligand=EDO:'>EDO</scene> and <scene name='pdbligand=FMT:'>FMT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQM OCA].  
<StructureSection load='2oqm' size='340' side='right'caption='[[2oqm]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2oqm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_denitrificans Shewanella denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OQM FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oqm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqm OCA], [https://pdbe.org/2oqm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oqm RCSB], [https://www.ebi.ac.uk/pdbsum/2oqm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oqm ProSAT], [https://www.topsan.org/Proteins/JCSG/2oqm TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q12RS4_SHEDO Q12RS4_SHEDO]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/2oqm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oqm ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Shewanella denitrificans]]
[[Category: Shewanella denitrificans]]
[[Category: Single protein]]
[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
[[Category: CL]]
[[Category: EDO]]
[[Category: FMT]]
[[Category: hypothetical protein]]
[[Category: jcsg]]
[[Category: joint center for structural genomics]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomics]]
[[Category: yp_561575.1]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:15:01 2008''
Retrieved from "https://proteopedia.org/2oqm"