435d: Difference between revisions

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New page: left|200px<br /><applet load="435d" size="350" color="white" frame="true" align="right" spinBox="true" caption="435d, resolution 1.40Å" /> '''5'-R(*UP*AP*GP*CP*CP...
 
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[[Image:435d.gif|left|200px]]<br /><applet load="435d" size="350" color="white" frame="true" align="right" spinBox="true"
caption="435d, resolution 1.40&Aring;" />
'''5'-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3''''<br />


==Overview==
==5'-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3'==
The acceptor stem of Escherichia coli tRNA(Ala), rGGGGCUA.rUAGCUCC, (ALAwt), contains the main identity element for the correct aminoacylation, by the alanyl tRNA synthetase. The presence of a G3.U70 wobble base pair, is essential for the specificity of this reaction, but there is a debate, whether direct minor-groove contact with the 2-amino group of G3 or a, distortion of the acceptor stem induced by the wobble pair is the critical, feature recognized by the synthetase. We here report the structure, analysis of ALAwt at near-atomic resolution using twinned crystals. The, crystal lattice is stabilized by a novel strontium binding motif between, two cis-diolic O3'-terminal riboses. The two independent molecules in the, asymmetric unit of the crystal show overall A-RNA geometry. A comparison, with the crystal structure of the G3-C70 mutant of the acceptor stem, (ALA(C70)) determined at 1.4 A exhibits a modulation in ALAwt of helical, twist and slide due to the wobble base pair, but no recognizable, distortion of the helix fragment distant from the wobble base pair. We, suggest that a highly conserved hydration pattern in both grooves around, the G3.U70 wobble base pair may be functionally significant.
<StructureSection load='435d' size='340' side='right'caption='[[435d]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[435d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=435D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=435D FirstGlance]. <br>
435D is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ] with <scene name='pdbligand=NA:'>NA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=435D OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
==Reference==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=435d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=435d OCA], [https://pdbe.org/435d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=435d RCSB], [https://www.ebi.ac.uk/pdbsum/435d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=435d ProSAT]</span></td></tr>
Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution., Mueller U, Schubel H, Sprinzl M, Heinemann U, RNA. 1999 May;5(5):670-7. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10334337 10334337]
</table>
[[Category: Protein complex]]
__TOC__
[[Category: Heinemann, U.]]
</StructureSection>
[[Category: Mueller, U.]]
[[Category: Large Structures]]
[[Category: Schuebel, H.]]
[[Category: Heinemann U]]
[[Category: Sprinzl, M.]]
[[Category: Mueller U]]
[[Category: NA]]
[[Category: Schuebel H]]
[[Category: 7 base-pair trna ala acceptor stem c70 mutant]]
[[Category: Sprinzl M]]
[[Category: double helix]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:43:22 2008''

Latest revision as of 10:39, 1 March 2024

5'-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3'

435d, resolution 1.40Å

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