2y5i: Difference between revisions

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[[Image:2y5i.png|left|200px]]


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==S100Z from zebrafish in complex with calcium==
The line below this paragraph, containing "STRUCTURE_2y5i", creates the "Structure Box" on the page.
<StructureSection load='2y5i' size='340' side='right'caption='[[2y5i]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2y5i]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y5I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y5I FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
{{STRUCTURE_2y5i|  PDB=2y5i  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y5i OCA], [https://pdbe.org/2y5i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y5i RCSB], [https://www.ebi.ac.uk/pdbsum/2y5i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y5i ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q503K9_DANRE Q503K9_DANRE]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The S100 family, with about 20 members in humans, is composed of EF-hand calcium-regulated proteins and is linked to a range of serious human diseases, including cancer and autoimmune and neurological disorders. The oldest S100 family members are found in teleosts (bony fish). The zebrafish, Danio rerio, was suggested as a promising model system for in vivo studies on S100 family functions, and we chose to investigate zebrafish S100Z as the closest homologue of the metastasis-promoting human S100A4. Here, we report the first crystal structure of an S100 protein from this organism, the calcium-bound state of S100Z to 2.03 A resolution. Crystal packing suggests higher-order oligomerisation of S100Z dimers, with a tetramerisation interface very similar to, but even more extensive than, that reported for S100A4. The interactions are primarily through the C-terminal alphaIV helices from adjacent dimers in an antiparallel orientation. Structural comparisons between known S100 multimeric assemblies together with analysis of calcium-driven changes to the dimerisation cores suggest a mechanism for calcium-promoted oligomerisation of S100 proteins.


===S100Z FROM ZEBRAFISH IN COMPLEX WITH CALCIUM===
The Crystal Structure of Zebrafish S100Z: Implications for Calcium-Promoted S100 Protein Oligomerisation.,Moroz OV, Bronstein IB, Wilson KS J Mol Biol. 2011 Jul 5. PMID:21756915<ref>PMID:21756915</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2y5i" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_21756915}}, adds the Publication Abstract to the page
*[[S100 proteins 3D structures|S100 proteins 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 21756915 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_21756915}}
__TOC__
 
</StructureSection>
==About this Structure==
[[2y5i]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y5I OCA].
 
==Reference==
<ref group="xtra">PMID:021756915</ref><references group="xtra"/>
[[Category: Danio rerio]]
[[Category: Danio rerio]]
[[Category: Bronstein, I B.]]
[[Category: Large Structures]]
[[Category: Moroz, O V.]]
[[Category: Bronstein IB]]
[[Category: Wilson, K S.]]
[[Category: Moroz OV]]
[[Category: Calcium regulation]]
[[Category: Wilson KS]]
[[Category: Ef-hand]]
[[Category: Metal-binding protein]]
[[Category: Neuronal development]]
[[Category: Oligomerisation]]
[[Category: Spine2]]
[[Category: Structural proteomics in europe 2]]

Latest revision as of 10:45, 20 December 2023

S100Z from zebrafish in complex with calcium

2y5i, resolution 2.03Å

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