3s34: Difference between revisions

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[[Image:3s34.jpg|left|200px]]


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==Structure of the 1121B Fab fragment==
The line below this paragraph, containing "STRUCTURE_3s34", creates the "Structure Box" on the page.
<StructureSection load='3s34' size='340' side='right'caption='[[3s34]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3s34]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S34 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3S34 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_3s34|  PDB=3s34  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3s34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3s34 OCA], [https://pdbe.org/3s34 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3s34 RCSB], [https://www.ebi.ac.uk/pdbsum/3s34 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3s34 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The anti-VEGF receptor 2 antibody IMC-1121B is a promising antiangiogenic drug being tested for treatment of breast and gastric cancer. We have determined the structure of the 1121B Fab fragment in complex with domain 3 of VEGFR2, as well as the structure of a different neutralizing anti-VEGFR2 antibody, 6.64, also in complex with VEGFR2 domain 3. The two Fab fragments bind at opposite ends of VEGFR2 domain 3; 1121B directly blocks VEGF binding, whereas 6.64 may prevent receptor dimerization by perturbing the domain 3:domain 4 interface. Mutagenesis reveals that residues essential for VEGF, 1121B, and 6.64 binding are nonoverlapping among the three contact patches.


===Structure of the 1121B Fab fragment===
The Structural Basis for the Function of Two Anti-VEGF Receptor 2 Antibodies.,Franklin MC, Navarro EC, Wang Y, Patel S, Singh P, Zhang Y, Persaud K, Bari A, Griffith H, Shen L, Balderes P, Kussie P Structure. 2011 Aug 10;19(8):1097-107. PMID:21827946<ref>PMID:21827946</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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(as it appears on PubMed at http://www.pubmed.gov), where 21827946 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_21827946}}
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</StructureSection>
==About this Structure==
[[Category: Homo sapiens]]
[[3s34]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus,_homo_sapiens Mus musculus, homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S34 OCA].
[[Category: Large Structures]]
 
[[Category: Mus musculus]]
==Reference==
[[Category: Franklin MC]]
<ref group="xtra">PMID:021827946</ref><references group="xtra"/>
[[Category: Mus musculus, homo sapiens]]
[[Category: Franklin, M C.]]
[[Category: Immune system]]
[[Category: Vegf receptor domain 3]]

Latest revision as of 08:08, 9 October 2024

Structure of the 1121B Fab fragment

3s34, resolution 2.20Å

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