3sku: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3sku.png|left|200px]]


<!--
==Herpes simplex virus glycoprotein D bound to the human receptor nectin-1==
The line below this paragraph, containing "STRUCTURE_3sku", creates the "Structure Box" on the page.
<StructureSection load='3sku' size='340' side='right'caption='[[3sku]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3sku]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_alphaherpesvirus_1 Human alphaherpesvirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SKU FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
{{STRUCTURE_3sku|  PDB=3sku  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sku OCA], [https://pdbe.org/3sku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sku RCSB], [https://www.ebi.ac.uk/pdbsum/3sku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sku ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q991M3_HHV1 Q991M3_HHV1]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Binding of herpes simplex virus (HSV) glycoprotein D (gD) to a cell surface receptor is required to trigger membrane fusion during entry into host cells. Nectin-1 is a cell adhesion molecule and the main HSV receptor in neurons and epithelial cells. We report the structure of gD bound to nectin-1 determined by x-ray crystallography to 4.0 A resolution. The structure reveals that the nectin-1 binding site on gD differs from the binding site of the HVEM receptor. A surface on the first Ig-domain of nectin-1, which mediates homophilic interactions of Ig-like cell adhesion molecules, buries an area composed by residues from both the gD N- and C-terminal extensions. Phenylalanine 129, at the tip of the loop connecting beta-strands F and G of nectin-1, protrudes into a groove on gD, which is otherwise occupied by C-terminal residues in the unliganded gD and by N-terminal residues in the gD/HVEM complex. Notably, mutation of Phe129 to alanine prevents nectin-1 binding to gD and HSV entry. Together these data are consistent with previous studies showing that gD disrupts the normal nectin-1 homophilic interactions. Furthermore, the structure of the complex supports a model in which gD-receptor binding triggers HSV entry through receptor-mediated displacement of the gD C-terminal region.


===Herpes simplex virus glycoprotein D bound to the human receptor nectin-1===
Structure of herpes simplex virus glycoprotein d bound to the human receptor nectin-1.,Di Giovine P, Settembre EC, Bhargava AK, Luftig MA, Lou H, Cohen GH, Eisenberg RJ, Krummenacher C, Carfi A PLoS Pathog. 2011 Sep;7(9):e1002277. Epub 2011 Sep 29. PMID:21980294<ref>PMID:21980294</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3sku" style="background-color:#fffaf0;"></div>


<!--
==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_21980294}}, adds the Publication Abstract to the page
*[[Glycoproteins B and D|Glycoproteins B and D]]
(as it appears on PubMed at http://www.pubmed.gov), where 21980294 is the PubMed ID number.
*[[Poliovirus receptor-related protein|Poliovirus receptor-related protein]]
-->
== References ==
{{ABSTRACT_PUBMED_21980294}}
<references/>
 
__TOC__
==About this Structure==
</StructureSection>
[[3sku]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Human_herpesvirus_1 Human herpesvirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SKU OCA].
 
==Reference==
<ref group="xtra">PMID:021980294</ref><references group="xtra"/>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Human herpesvirus 1]]
[[Category: Human alphaherpesvirus 1]]
[[Category: Bhargava, A K.]]
[[Category: Large Structures]]
[[Category: Carfi, A.]]
[[Category: Bhargava AK]]
[[Category: Cohen, G H.]]
[[Category: Carfi A]]
[[Category: Eisenberg, R J.]]
[[Category: Cohen GH]]
[[Category: Giovine, P Di.]]
[[Category: Di Giovine P]]
[[Category: Krummenacher, C.]]
[[Category: Eisenberg RJ]]
[[Category: Lou, H.]]
[[Category: Krummenacher C]]
[[Category: Luftig, M A.]]
[[Category: Lou H]]
[[Category: Settembre, E C.]]
[[Category: Luftig MA]]
[[Category: Immunoglobulin-like fold]]
[[Category: Settembre EC]]
[[Category: Viral protein-protein binding complex]]

Latest revision as of 10:26, 6 November 2024

Herpes simplex virus glycoprotein D bound to the human receptor nectin-1

3sku, resolution 4.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA