3tdi: Difference between revisions

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[[Image:3tdi.png|left|200px]]


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==yeast Cul1WHB-Dcn1P acetylated Ubc12N complex==
The line below this paragraph, containing "STRUCTURE_3tdi", creates the "Structure Box" on the page.
<StructureSection load='3tdi' size='340' side='right'caption='[[3tdi]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3tdi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TDI FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
{{STRUCTURE_3tdi|  PDB=3tdi  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tdi OCA], [https://pdbe.org/3tdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tdi RCSB], [https://www.ebi.ac.uk/pdbsum/3tdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tdi ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Although most eukaryotic proteins are N-terminally acetylated, structural mechanisms by which N-terminal acetylation mediates protein interactions are largely unknown. Here, we found that N-terminal acetylation of the E2 enzyme, Ubc12, dictates distinctive E3-dependent ligation of the ubiquitin-like protein, Nedd8, to Cul1. Structural, biochemical, biophysical, and genetic analyses revealed how complete burial of Ubc12's N-acetyl-methionine in a hydrophobic pocket in the E3, Dcn1, promotes cullin neddylation. The results suggest that the N-terminal acetyl both directs Ubc12's interactions with Dcn1, and prevents repulsion of a charged N-terminus. Our data provide a link between acetylation and ubiquitin-like protein conjugation, and define a mechanism for N-terminal acetylation-dependent recognition.


===yeast Cul1WHB-Dcn1P acetylated Ubc12N complex===
N-Terminal Acetylation Acts as an Avidity Enhancer Within an Interconnected Multiprotein Complex.,Scott DC, Monda JK, Bennett EJ, Harper JW, Schulman BA Science. 2011 Sep 22. PMID:21940857<ref>PMID:21940857</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3tdi" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_21940857}}, adds the Publication Abstract to the page
*[[3D structures of ubiquitin conjugating enzyme|3D structures of ubiquitin conjugating enzyme]]
(as it appears on PubMed at http://www.pubmed.gov), where 21940857 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_21940857}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
[[3tdi]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TDI OCA].
[[Category: Saccharomyces cerevisiae S288C]]
 
[[Category: Bennett EJ]]
==Reference==
[[Category: Harper JW]]
<ref group="xtra">PMID:021940857</ref><references group="xtra"/>
[[Category: Monda JK]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Schulman BA]]
[[Category: Bennett, E J.]]
[[Category: Scott DC]]
[[Category: Harper, J W.]]
[[Category: Monda, J K.]]
[[Category: Schulman, B A.]]
[[Category: Scott, D C.]]
[[Category: E2:e3]]
[[Category: Ligase-protein binding complex]]
Retrieved from "https://proteopedia.org/3tdi"