3ksn: Difference between revisions

(5 intermediate revisions by the same user not shown)

Line 1:

~~[[Image:3ksn.png|left|200px]]~~

~~<!--~~

==Crystal structure of the lipoprotein localization factor, LolA==

~~The line below this paragraph, containing "STRUCTURE_3ksn", creates the "Structure Box" on the page.~~

~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~

== Structural highlights ==

~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~

<table><tr><td colspan='2'>[[3ksn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KSN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KSN FirstGlance]. <br>

~~or leave the SCENE parameter empty for the default display.~~

</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr>

~~-->~~

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ksn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ksn OCA], [https://pdbe.org/3ksn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ksn RCSB], [https://www.ebi.ac.uk/pdbsum/3ksn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ksn ProSAT]</span></td></tr>

~~{{STRUCTURE_3ksn| PDB=3ksn | SCENE= }}~~

</table>

== Function ==

===Crystal structure of the lipoprotein localization factor, LolA===

[https://www.uniprot.org/uniprot/LOLA_ECOLI LOLA_ECOLI] Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane); the inner membrane retention signal functions at the release step.<ref>PMID:11758943</ref> May act as a regulator of the RCS-phosphorelay signal transduction pathway.<ref>PMID:11758943</ref>

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

==~~About this Structure~~==

Check<jmol>

[[3ksn]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Escherichia_coli~~ Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KSN OCA].

[[~~Category~~: ~~Escherichia coli~~]]

<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/3ksn_consurf.spt"</scriptWhenChecked>

[[~~Category~~: ~~Ahmadpour~~, F.]]

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

[[~~Category~~: ~~Brown~~, ~~E D~~.]]

<text>to colour the structure by Evolutionary Conservation</text>

[[Category: ~~Gloyd, M.~~]]

</jmolCheckbox>

[[Category: ~~Guarne, A.~~]]

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ksn ConSurf].

[[Category: ~~Pathania, R.~~]]

[[Category: ~~Stewart, G.~~]]

== References ==

[[Category: ~~Chaperone~~]]

[[Category: ~~Lipoprotein carrier~~]]

__TOC__

[[Category: ~~Protein transport~~]]

</StructureSection>

[[Category: ~~Transport~~]]

[[Category: Escherichia coli K-12]]

[[Category: Large Structures]]

[[Category: Ahmadpour F]]

[[Category: Brown ED]]

[[Category: Gloyd M]]

[[Category: Guarne A]]

[[Category: Pathania R]]

[[Category: Stewart G]]

Navigation menu

Page actions

Page actions

Personal tools

Navigation

Search

Tools

@@ Line 1: / Line 1: @@
-[[Image:3ksn.png|left|200px]]
-<!--
+==Crystal structure of the lipoprotein localization factor, LolA==
-The line below this paragraph, containing "STRUCTURE_3ksn", creates the "Structure Box" on the page.
+<StructureSection load='3ksn' size='340' side='right'caption='[[3ksn]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3ksn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KSN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KSN FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ksn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ksn OCA], [https://pdbe.org/3ksn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ksn RCSB], [https://www.ebi.ac.uk/pdbsum/3ksn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ksn ProSAT]</span></td></tr>
-{{STRUCTURE_3ksn|  PDB=3ksn  |  SCENE=  }}
+</table>
+== Function ==
-===Crystal structure of the lipoprotein localization factor, LolA===
+[https://www.uniprot.org/uniprot/LOLA_ECOLI LOLA_ECOLI] Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane); the inner membrane retention signal functions at the release step.<ref>PMID:11758943</ref>   May act as a regulator of the RCS-phosphorelay signal transduction pathway.<ref>PMID:11758943</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-[[3ksn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KSN OCA].
+  <jmolCheckbox>
-[[Category: Escherichia coli]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/3ksn_consurf.spt"</scriptWhenChecked>
-[[Category: Ahmadpour, F.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Brown, E D.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Gloyd, M.]]
+  </jmolCheckbox>
-[[Category: Guarne, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ksn ConSurf].
-[[Category: Pathania, R.]]
+<div style="clear:both"></div>
-[[Category: Stewart, G.]]
+== References ==
-[[Category: Chaperone]]
+<references/>
-[[Category: Lipoprotein carrier]]
+__TOC__
-[[Category: Protein transport]]
+</StructureSection>
-[[Category: Transport]]
+[[Category: Escherichia coli K-12]]
+[[Category: Large Structures]]
+[[Category: Ahmadpour F]]
+[[Category: Brown ED]]
+[[Category: Gloyd M]]
+[[Category: Guarne A]]
+[[Category: Pathania R]]
+[[Category: Stewart G]]