3sbj: Difference between revisions

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[[Image:3sbj.png|left|200px]]


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==MutM slanted complex 7==
The line below this paragraph, containing "STRUCTURE_3sbj", creates the "Structure Box" on the page.
<StructureSection load='3sbj' size='340' side='right'caption='[[3sbj]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3sbj]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SBJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SBJ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CX2:2-DEOXY-5-O-{(R)-HYDROXY[(2-SULFANYLETHYL)AMINO]PHOSPHORYL}CYTIDINE'>CX2</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3sbj|  PDB=3sbj  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sbj OCA], [https://pdbe.org/3sbj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sbj RCSB], [https://www.ebi.ac.uk/pdbsum/3sbj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sbj ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/P84131_GEOSE P84131_GEOSE] Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates (By similarity).[HAMAP-Rule:MF_00103][SAAS:SAAS020629_004_120556]


===MutM slanted complex 7===
==See Also==
 
*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
[[3sbj]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SBJ OCA].
[[Category: Geobacillus stearothermophilus]]
[[Category: Geobacillus stearothermophilus]]
[[Category: Sung, R J.]]
[[Category: Large Structures]]
[[Category: Verdine, G L.]]
[[Category: Sung RJ]]
[[Category: Zhang, M.]]
[[Category: Verdine GL]]
[[Category: Damage search]]
[[Category: Zhang M]]
[[Category: Disulfide crosslinking]]
[[Category: Dna glycosylase]]
[[Category: Dna repair]]
[[Category: Hydrolase-dna complex]]
[[Category: Translocation]]

Latest revision as of 09:49, 1 March 2024

MutM slanted complex 7

3sbj, resolution 2.10Å

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