3t1y: Difference between revisions

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[[Image:3t1y.png|left|200px]]


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==Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin==
The line below this paragraph, containing "STRUCTURE_3t1y", creates the "Structure Box" on the page.
<StructureSection load='3t1y' size='340' side='right'caption='[[3t1y]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3t1y]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27] and [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T1Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T1Y FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=12A:2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE-5-MONOPHOSPHATE'>12A</scene>, <scene name='pdbligand=70U:5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5-MONOPHOSPHATE'>70U</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PAR:PAROMOMYCIN'>PAR</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3t1y|  PDB=3t1y  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t1y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t1y OCA], [https://pdbe.org/3t1y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t1y RCSB], [https://www.ebi.ac.uk/pdbsum/3t1y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t1y ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RS2_THET8 RS2_THET8] Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit.[HAMAP-Rule:MF_00291_B]


===Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin===
==See Also==
 
*[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]]
 
*[[Ribosome 3D structures|Ribosome 3D structures]]
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*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
The line below this paragraph, {{ABSTRACT_PUBMED_22227389}}, adds the Publication Abstract to the page
__TOC__
(as it appears on PubMed at http://www.pubmed.gov), where 22227389 is the PubMed ID number.
</StructureSection>
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[[Category: Large Structures]]
{{ABSTRACT_PUBMED_22227389}}
[[Category: Thermus thermophilus HB27]]
 
[[Category: Thermus thermophilus HB8]]
==About this Structure==
[[Category: Agris PF]]
[[3t1y]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T1Y OCA].
[[Category: Cantara W]]
 
[[Category: Gustilo EM]]
==Reference==
[[Category: Leszczynska G]]
<ref group="xtra">PMID:022227389</ref><references group="xtra"/>
[[Category: Malkiewicz AAP]]
[[Category: Thermus thermophilus]]
[[Category: Murphy FV]]
[[Category: Agris, P F.]]
[[Category: Sproat B]]
[[Category: Cantara, W.]]
[[Category: Vendeix FAP]]
[[Category: Gustilo, E M.]]
[[Category: Leszczynska, G.]]
[[Category: Malkiewicz, A A.P.]]
[[Category: Murphy, F V.]]
[[Category: Sproat, B.]]
[[Category: Vendeix, F A.P.]]
[[Category: Protein synthesis]]
[[Category: Ribosome-antibiotic complex]]
[[Category: Trna]]
Retrieved from "https://proteopedia.org/3t1y"