3vca: Difference between revisions

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[[Image:3vca.jpg|left|200px]]


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==Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman and UV-visible Spectroscopic Analysis of a Rieske-type Demethylase==
The line below this paragraph, containing "STRUCTURE_3vca", creates the "Structure Box" on the page.
<StructureSection load='3vca' size='340' side='right'caption='[[3vca]], [[Resolution|resolution]] 1.59&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3vca]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti_1021 Sinorhizobium meliloti 1021]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VCA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VCA FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.59&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PRO:PROLINE'>PRO</scene></td></tr>
{{STRUCTURE_3vca|  PDB=3vca  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vca OCA], [https://pdbe.org/3vca PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vca RCSB], [https://www.ebi.ac.uk/pdbsum/3vca PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vca ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q92ZP9_RHIME Q92ZP9_RHIME]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Herein, the structure resulting from in situ turnover in a chemically challenging quaternary ammonium oxidative demethylation reaction was captured via crystallographic analysis and analyzed via single-crystal spectroscopy. Crystal structures were determined for the Rieske-type monooxygenase, stachydrine demethylase, in the unliganded state (at 1.6 A resolution) and in the product complex (at 2.2 A resolution). The ligand complex was obtained from enzyme aerobically cocrystallized with the substrate stachydrine (N,N-dimethylproline). The ligand electron density in the complex was interpreted as proline, generated within the active site at 100 K by the absorption of X-ray photon energy and two consecutive demethylation cycles. The oxidation state of the Rieske iron-sulfur cluster was characterized by UV-visible spectroscopy throughout X-ray data collection in conjunction with resonance Raman spectra collected before and after diffraction data. Shifts in the absorption band wavelength and intensity as a function of absorbed X-ray dose demonstrated that the Rieske center was reduced by solvated electrons generated by X-ray photons; the kinetics of the reduction process differed dramatically for the liganded complex compared to unliganded demethylase, which may correspond to the observed turnover in the crystal.


===Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman and UV-visible Spectroscopic Analysis of a Rieske-type Demethylase===
Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman, and UV-Visible Spectroscopic Analysis of a Rieske-Type Demethylase.,Daughtry KD, Xiao Y, Stoner-Ma D, Cho E, Orville AM, Liu P, Allen KN J Am Chem Soc. 2012 Jan 26. PMID:22224443<ref>PMID:22224443</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
The line below this paragraph, {{ABSTRACT_PUBMED_22224443}}, adds the Publication Abstract to the page
<div class="pdbe-citations 3vca" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 22224443 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_22224443}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
[[3vca]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VCA OCA].
[[Category: Sinorhizobium meliloti 1021]]
 
[[Category: Allen KN]]
==Reference==
[[Category: Cho E]]
<ref group="xtra">PMID:022224443</ref><references group="xtra"/>
[[Category: Daughtry KD]]
[[Category: Sinorhizobium meliloti]]
[[Category: Liu P]]
[[Category: Allen, K N.]]
[[Category: Orville AM]]
[[Category: Cho, E.]]
[[Category: Stoner-Ma D]]
[[Category: Daughtry, K D.]]
[[Category: Xiao Y]]
[[Category: Liu, P.]]
[[Category: Orville, A M.]]
[[Category: Stoner-Ma, D.]]
[[Category: Xiao, Y.]]
[[Category: Mononuclear non-heme iron]]
[[Category: N-demethylase]]
[[Category: Oxidoreductase]]
[[Category: Rieske-type]]

Latest revision as of 09:47, 30 October 2024

Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman and UV-visible Spectroscopic Analysis of a Rieske-type Demethylase

3vca, resolution 1.59Å

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