3dme: Difference between revisions

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[[Image:3dme.png|left|200px]]


<!--
==Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141==
The line below this paragraph, containing "STRUCTURE_3dme", creates the "Structure Box" on the page.
<StructureSection load='3dme' size='340' side='right'caption='[[3dme]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dme]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DME OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DME FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
{{STRUCTURE_3dme|  PDB=3dme  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dme OCA], [https://pdbe.org/3dme PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dme RCSB], [https://www.ebi.ac.uk/pdbsum/3dme PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dme ProSAT]</span></td></tr>
 
</table>
===Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141===
== Function ==
 
[https://www.uniprot.org/uniprot/Q7VU70_BORPE Q7VU70_BORPE]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
[[3dme]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DME OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dme_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dme ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bordetella pertussis]]
[[Category: Bordetella pertussis]]
[[Category: Abashidze, M.]]
[[Category: Large Structures]]
[[Category: Acton, T B.]]
[[Category: Abashidze M]]
[[Category: Everett, J K.]]
[[Category: Acton TB]]
[[Category: Foote, E L.]]
[[Category: Everett JK]]
[[Category: Hunt, J F.]]
[[Category: Foote EL]]
[[Category: Janjua, H.]]
[[Category: Hunt JF]]
[[Category: Liu, J.]]
[[Category: Janjua H]]
[[Category: Montelione, G T.]]
[[Category: Liu J]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Montelione GT]]
[[Category: Rost, B.]]
[[Category: Rost B]]
[[Category: Seetharaman, J.]]
[[Category: Seetharaman J]]
[[Category: Tong, L.]]
[[Category: Tong L]]
[[Category: Wang, D.]]
[[Category: Wang D]]
[[Category: Xiao, R.]]
[[Category: Xiao R]]
[[Category: Conserved exported protein]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Unknown function]]

Latest revision as of 09:42, 21 February 2024

Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141

3dme, resolution 1.70Å

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