3t3f: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3t3f.png|left|200px]]


<!--
==Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP==
The line below this paragraph, containing "STRUCTURE_3t3f", creates the "Structure Box" on the page.
<StructureSection load='3t3f' size='340' side='right'caption='[[3t3f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3t3f]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T3F FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=N5P:1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H-INDOLE'>N5P</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_3t3f|  PDB=3t3f  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t3f OCA], [https://pdbe.org/3t3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t3f RCSB], [https://www.ebi.ac.uk/pdbsum/3t3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t3f ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]


===Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP===
==See Also==
 
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
[[3t3f]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3F OCA].
[[Category: Large Structures]]
 
==Reference==
<ref group="xtra">PMID:022318723</ref><references group="xtra"/>
[[Category: DNA-directed DNA polymerase]]
[[Category: Thermus aquaticus]]
[[Category: Thermus aquaticus]]
[[Category: Diederichs, K.]]
[[Category: Diederichs K]]
[[Category: Marx, A.]]
[[Category: Marx A]]
[[Category: Obeid, S.]]
[[Category: Obeid S]]
[[Category: A-rule]]
[[Category: Abasic site]]
[[Category: Base analogue]]
[[Category: Base stacking]]
[[Category: Dna polymerase]]
[[Category: Dnitp]]
[[Category: Nitroindol triphosphate]]
[[Category: Transferase-dna complex]]
[[Category: Translesion synthesis]]

Latest revision as of 13:16, 14 March 2024

Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP

3t3f, resolution 1.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3t3f&oldid=4097861"