3bvc: Difference between revisions

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New page: left|200px<br /><applet load="3bvc" size="350" color="white" frame="true" align="right" spinBox="true" caption="3bvc, resolution 2.75Å" /> '''Crystal structure of...
 
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[[Image:3bvc.jpg|left|200px]]<br /><applet load="3bvc" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3bvc, resolution 2.75&Aring;" />
'''Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM'''<br />


==About this Structure==
==Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM==
3BVC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ism Roseovarius nubinhibens ism] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=NI:'>NI</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Ca+Binding+Site+For+Residue+A+301'>AC1</scene>, <scene name='pdbsite=AC2:Ca+Binding+Site+For+Residue+A+302'>AC2</scene>, <scene name='pdbsite=AC3:Ni+Binding+Site+For+Residue+A+304'>AC3</scene> and <scene name='pdbsite=AC4:Ni+Binding+Site+For+Residue+B+305'>AC4</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BVC OCA].  
<StructureSection load='3bvc' size='340' side='right'caption='[[3bvc]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
[[Category: Roseovarius nubinhibens ism]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[3bvc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ISM Roseovarius nubinhibens ISM]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BVC FirstGlance]. <br>
[[Category: Almo, S.C.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
[[Category: Burley, S.K.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
[[Category: Iizuka, M.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bvc OCA], [https://pdbe.org/3bvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bvc RCSB], [https://www.ebi.ac.uk/pdbsum/3bvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bvc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bvc TOPSAN]</span></td></tr>
[[Category: Maletic, M.]]
</table>
[[Category: Meyer, A.J.]]
== Function ==
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
[https://www.uniprot.org/uniprot/A3SHZ8_ROSNI A3SHZ8_ROSNI]  
[[Category: Patskovsky, Y.]]
== Evolutionary Conservation ==
[[Category: Rutter, M.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Sauder, J.M.]]
Check<jmol>
[[Category: Smith, D.]]
  <jmolCheckbox>
[[Category: Toro, R.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bvc_consurf.spt"</scriptWhenChecked>
[[Category: Wasserman, S.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: CA]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: NI]]
  </jmolCheckbox>
[[Category: iron-binding protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bvc ConSurf].
[[Category: new york structural genomix research consortium]]
<div style="clear:both"></div>
[[Category: nickel]]
__TOC__
[[Category: nysgxrc]]
</StructureSection>
[[Category: protein structure initiative]]
[[Category: Large Structures]]
[[Category: psi-2]]
[[Category: Roseovarius nubinhibens ISM]]
[[Category: rhodobacterales]]
[[Category: Almo SC]]
[[Category: roseovarius nubinhibens ism]]
[[Category: Burley SK]]
[[Category: structural genomics]]
[[Category: Iizuka M]]
[[Category: unknown function]]
[[Category: Maletic M]]
 
[[Category: Meyer AJ]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 13 08:24:01 2008''
[[Category: Patskovsky Y]]
[[Category: Rutter M]]
[[Category: Sauder JM]]
[[Category: Smith D]]
[[Category: Toro R]]
[[Category: Wasserman S]]