3ver: Difference between revisions

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[[Image:3ver.png|left|200px]]


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==Crystal structure of the O-carbamoyltransferase TobZ in complex with carbamoyl adenylate intermediate==
The line below this paragraph, containing "STRUCTURE_3ver", creates the "Structure Box" on the page.
<StructureSection load='3ver' size='340' side='right'caption='[[3ver]], [[Resolution|resolution]] 2.34&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ver]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptoalloteichus_tenebrarius Streptoalloteichus tenebrarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VER FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.34&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA0:5-O-[(S)-(CARBAMOYLOXY)(HYDROXY)PHOSPHORYL]ADENOSINE'>CA0</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_3ver|  PDB=3ver  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ver FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ver OCA], [https://pdbe.org/3ver PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ver RCSB], [https://www.ebi.ac.uk/pdbsum/3ver PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ver ProSAT]</span></td></tr>
 
</table>
===Crystal structure of the O-carbamoyltransferase TobZ in complex with carbamoyl adenylate intermediate===
== Function ==
 
[https://www.uniprot.org/uniprot/TOBZ_STRSD TOBZ_STRSD] TobZ is involved in the biosynthesis of the 2-deoxystreptamine-containing aminoglycoside antibiotics such as nebramycin 5 and 6-O-carbamoylkanamycin. Catalyzes the hydrolysis of carbamoyl phosphate and its subsequent adenylation by ATP to yield O-carbamoyladenylate. Then it catalyzes the transfer of the carbamoyl moiety from O-carbamoyladenylate to the tobramycin 6-hydroxy group to yield nebramycin 5. It catalyzes the same reaction with kanamycin A. These reactions are considerably slower in the presence of deoxy-ATP.<ref>PMID:20936279</ref> <ref>PMID:22383337</ref>  
 
== References ==
<!--
<references/>
The line below this paragraph, {{ABSTRACT_PUBMED_22383337}}, adds the Publication Abstract to the page
__TOC__
(as it appears on PubMed at http://www.pubmed.gov), where 22383337 is the PubMed ID number.
</StructureSection>
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[[Category: Large Structures]]
{{ABSTRACT_PUBMED_22383337}}
 
==About this Structure==
[[3ver]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptoalloteichus_tenebrarius Streptoalloteichus tenebrarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VER OCA].  
 
==Reference==
<ref group="xtra">PMID:022383337</ref><references group="xtra"/>
[[Category: Streptoalloteichus tenebrarius]]
[[Category: Streptoalloteichus tenebrarius]]
[[Category: Goerlich, S.]]
[[Category: Goerlich S]]
[[Category: Jaenecke, F.]]
[[Category: Jaenecke F]]
[[Category: Parthier, C.]]
[[Category: Parthier C]]
[[Category: Stubbs, M T.]]
[[Category: Stubbs MT]]
[[Category: Adenylation]]
[[Category: Antibiotic biosynthesis]]
[[Category: Enzyme evolution]]
[[Category: Structural enzymology]]
[[Category: Substrate assisted catalysis]]
[[Category: Substrate channeling]]
[[Category: Transferase]]

Latest revision as of 14:26, 14 March 2024

Crystal structure of the O-carbamoyltransferase TobZ in complex with carbamoyl adenylate intermediate

3ver, resolution 2.34Å

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