3v3y: Difference between revisions

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[[Image:3v3y.jpg|left|200px]]


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==Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV==
The line below this paragraph, containing "STRUCTURE_3v3y", creates the "Structure Box" on the page.
<StructureSection load='3v3y' size='340' side='right'caption='[[3v3y]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3v3y]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V3Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V3Y FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPN:SPEROIDENONE'>SPN</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene></td></tr>
{{STRUCTURE_3v3y|  PDB=3v3y  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v3y OCA], [https://pdbe.org/3v3y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v3y RCSB], [https://www.ebi.ac.uk/pdbsum/3v3y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v3y ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RCEH_CERSP RCEH_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
To explore the influence of the I(L177)H single mutation on the properties of the nearest bacteriochlorophylls (BChls), three reaction centers (RCs) bearing double mutations were constructed in the photosynthetic purple bacterium Rhodobacter sphaeroides, and their properties and pigment content were compared with those of the correspondent single mutant RCs. Each pair of the mutations comprised the amino acid substitution I(L177)H and another mutation altering histidine ligand of BChl P(A) or BChl B(B). Contrary to expectations, the double mutation I(L177)H+H(L173)L does not bring about a heterodimer RC but causes a 46nm blue shift of the long-wavelength P absorbance band. The histidine L177 or a water molecule were suggested as putative ligands for P(A) in the RC I(L177)H+H(L173)L although this would imply a reorientation of the His backbone and additional rearrangements in the primary donor environment or even a repositioning of the BChl dimer. The crystal structure of the mutant I(L177)H reaction center determined to a resolution of 2.9A shows changes at the interface region between the BChl P(A) and the monomeric BChl B(B). Spectral and pigment analysis provided evidence for beta-coordination of the BChl B(B) in the double mutant RC I(L177)H+H(M182)L and for its hexacoordination in the mutant reaction center I(L177)H. Computer modeling suggests involvement of two water molecules in the beta-coordination of the BChl B(B). Possible structural consequences of the L177 mutation affecting the coordination of the two BChls P(A) and B(B) are discussed. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Articifical Photosynthesis.


===Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV===
The site-directed mutation I(L177)H in Rhodobacter sphaeroides reaction center affects coordination of P(A) and B(B) bacteriochlorophylls.,Vasilieva LG, Fufina TY, Gabdulkhakov AG, Leonova MM, Khatypov RA, Shuvalov VA Biochim Biophys Acta. 2012 Feb 15. PMID:22365928<ref>PMID:22365928</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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(as it appears on PubMed at http://www.pubmed.gov), where 22365928 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_22365928}}
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</StructureSection>
==About this Structure==
[[Category: Cereibacter sphaeroides]]
[[3v3y]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V3Y OCA].
[[Category: Large Structures]]
 
[[Category: Fufina TY]]
==Reference==
[[Category: Gabdulkhakov AG]]
<ref group="xtra">PMID:022365928</ref><references group="xtra"/>
[[Category: Shuvalov VA]]
[[Category: Rhodobacter sphaeroides]]
[[Category: Vasilieva LG]]
[[Category: Fufina, T Y.]]
[[Category: Gabdulkhakov, A G.]]
[[Category: Shuvalov, V A.]]
[[Category: Vasilieva, L G.]]
[[Category: Electron transport]]
[[Category: Membrane]]
[[Category: Photosynthetic reaction center]]
[[Category: Primary electron donor]]
Retrieved from "https://proteopedia.org/3v3y"