3qxj: Difference between revisions

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[[Image:3qxj.png|left|200px]]


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==Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GTP==
The line below this paragraph, containing "STRUCTURE_3qxj", creates the "Structure Box" on the page.
<StructureSection load='3qxj' size='340' side='right'caption='[[3qxj]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3qxj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QXJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QXJ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.38&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
{{STRUCTURE_3qxj|  PDB=3qxj  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qxj OCA], [https://pdbe.org/3qxj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qxj RCSB], [https://www.ebi.ac.uk/pdbsum/3qxj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qxj ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/BIOD_HELPY BIOD_HELPY] Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring (By similarity).[HAMAP-Rule:MF_00336]


===Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GTP===
==See Also==
 
*[[Dethiobiotin synthetase 3D structures|Dethiobiotin synthetase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_22284390}}, adds the Publication Abstract to the page
[[Category: Helicobacter pylori 26695]]
(as it appears on PubMed at http://www.pubmed.gov), where 22284390 is the PubMed ID number.
[[Category: Large Structures]]
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[[Category: Chruszcz M]]
{{ABSTRACT_PUBMED_22284390}}
[[Category: Joachimiak A]]
 
[[Category: Klimecka MM]]
==About this Structure==
[[Category: Minor W]]
[[3qxj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QXJ OCA].
[[Category: Murzyn K]]
 
[[Category: Porebski PJ]]
==Reference==
<ref group="xtra">PMID:022284390</ref><references group="xtra"/>
[[Category: Dethiobiotin synthase]]
[[Category: Helicobacter pylori]]
[[Category: Chruszcz, M.]]
[[Category: Joachimiak, A.]]
[[Category: Klimecka, M M.]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Minor, W.]]
[[Category: Murzyn, K.]]
[[Category: Porebski, P J.]]
[[Category: Adp binding]]
[[Category: Dethiobiotin synthetase]]
[[Category: Dtb]]
[[Category: Ligase]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein structure initiative]]
[[Category: Psi-biology]]
[[Category: Structural genomic]]
Retrieved from "https://proteopedia.org/3qxj"